View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16139_low_3 (Length: 467)
Name: NF16139_low_3
Description: NF16139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16139_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 25 - 451
Target Start/End: Complemental strand, 31648207 - 31647781
Alignment:
| Q |
25 |
gctccatcacctttcaaactttggtttatataatctctaatcattgtggttcaactttctcaggtgtaaatcttaaaccactagtgcatgcatctgagaa |
124 |
Q |
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| T |
31648207 |
gctccatcacctttcaaactttggtttatataatctctaatcattgtggttcaactttctcaggtgtaaatcttaaaccactagtgcatgcatccgagaa |
31648108 |
T |
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| Q |
125 |
ttatcgtacgattcttgcagaaaatagaaaactatttaatgaacttcaagaattaaaaggtgacattattttcttctgattaatgcaggtatgtcactat |
224 |
Q |
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| T |
31648107 |
ttatcgtacgattcttgcagaaaatagaaaactatttaatgaacttcaagaattaaaaggtgacattattttcttctgattaatgcaggtatgtcactat |
31648008 |
T |
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| Q |
225 |
tgagaattctgataaatattttctttatacaggaaatattagagtatattgtagaattagaccatttcttcctggacaaaaagaaaaacaaactattgtg |
324 |
Q |
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| T |
31648007 |
tgagaattctgataaatattttctttatacaggaaatattagagtatattgtagaattagaccatttcttcctggacaaaaagaaaaacaaactattgtg |
31647908 |
T |
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| Q |
325 |
gaacgtattggtgaatctgatttggttgtagcaaatccctccaagcaagggaaagaagcactcaaaacatttaagtttaataagatctctgctccttcat |
424 |
Q |
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| T |
31647907 |
gaacgtattggtgaatctgatttggttgtagcaaatccctccaagcaagggaaagaagcactcaaaacatttaagtttaataagatctttggtccttcat |
31647808 |
T |
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| Q |
425 |
caactcaaggtttatttctatattatc |
451 |
Q |
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| T |
31647807 |
caactcaaggtttatttctatattatc |
31647781 |
T |
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Back To:
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 380
Target Start/End: Original strand, 43879914 - 43880043
Alignment:
| Q |
251 |
atacaggaaatattagagtatattgtagaattagaccatttcttcctggacaaaaa-gaaaaacaaactattgtggaacgtattggtgaatctgatttgg |
349 |
Q |
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| T |
43879914 |
atacaggaaatatcagagtattttgtcgaattagaccattcctt-atagacaaaaaggaaaaacagtctattgtagaagacataggtgaaagtgatttgg |
43880012 |
T |
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| Q |
350 |
ttgtagcaaatccctccaagcaagggaaaga |
380 |
Q |
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| T |
43880013 |
ttgtggtaaatccctccaaagaagggaaaga |
43880043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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