View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16139_low_4 (Length: 373)

Name: NF16139_low_4
Description: NF16139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16139_low_4
NF16139_low_4
[»] chr5 (16 HSPs)
chr5 (1-261)||(30335930-30336187)
chr5 (276-334)||(3598922-3598980)
chr5 (273-332)||(124531-124590)
chr5 (275-334)||(3597322-3597381)
chr5 (276-334)||(17414544-17414602)
chr5 (276-332)||(5504138-5504194)
chr5 (276-328)||(17415695-17415747)
chr5 (273-332)||(8061853-8061912)
chr5 (274-332)||(5502916-5502973)
chr5 (275-332)||(121348-121405)
chr5 (275-332)||(24242016-24242073)
chr5 (286-332)||(12406051-12406097)
chr5 (295-332)||(3333959-3333996)
chr5 (275-332)||(8067452-8067509)
chr5 (275-332)||(14190489-14190546)
chr5 (276-332)||(14189664-14189720)
[»] chr4 (14 HSPs)
chr4 (1-261)||(22682106-22682365)
chr4 (275-332)||(8747690-8747747)
chr4 (275-334)||(40168638-40168697)
chr4 (275-332)||(8749048-8749105)
chr4 (277-334)||(40169779-40169836)
chr4 (276-332)||(33997898-33997954)
chr4 (275-332)||(8896955-8897012)
chr4 (276-334)||(55986309-55986367)
chr4 (276-332)||(48157680-48157736)
chr4 (291-334)||(14835583-14835626)
chr4 (286-332)||(25909497-25909543)
chr4 (286-332)||(49185581-49185626)
chr4 (285-330)||(2836908-2836953)
chr4 (273-334)||(31435852-31435912)
[»] chr8 (8 HSPs)
chr8 (87-166)||(40970953-40971032)
chr8 (209-261)||(40971783-40971835)
chr8 (275-334)||(38612218-38612277)
chr8 (275-334)||(38613417-38613476)
chr8 (273-324)||(13883878-13883929)
chr8 (275-334)||(23039527-23039586)
chr8 (295-332)||(28349565-28349602)
chr8 (274-334)||(23039122-23039182)
[»] chr1 (10 HSPs)
chr1 (276-332)||(46312065-46312121)
chr1 (275-334)||(46313274-46313333)
chr1 (273-323)||(14512669-14512719)
chr1 (273-331)||(46524537-46524595)
chr1 (276-324)||(2999491-2999539)
chr1 (276-332)||(46525844-46525900)
chr1 (286-332)||(3377511-3377557)
chr1 (274-332)||(50226390-50226448)
chr1 (275-324)||(3000223-3000272)
chr1 (275-332)||(50379974-50380031)
[»] chr3 (15 HSPs)
chr3 (276-334)||(26722533-26722591)
chr3 (273-334)||(26723904-26723965)
chr3 (276-332)||(10584084-10584140)
chr3 (276-332)||(32829740-32829796)
chr3 (274-332)||(51220604-51220662)
chr3 (276-332)||(51219462-51219518)
chr3 (275-334)||(21326319-21326378)
chr3 (273-324)||(32831100-32831151)
chr3 (275-334)||(54539108-54539167)
chr3 (275-334)||(54539498-54539557)
chr3 (273-334)||(48053123-48053184)
chr3 (275-328)||(53157182-53157234)
chr3 (286-332)||(33329880-33329926)
chr3 (286-332)||(44586044-44586090)
chr3 (286-332)||(51315742-51315788)
[»] chr2 (11 HSPs)
chr2 (275-334)||(10851912-10851971)
chr2 (275-332)||(27552451-27552508)
chr2 (275-334)||(45413477-45413536)
chr2 (276-334)||(28851672-28851730)
chr2 (274-334)||(10853145-10853205)
chr2 (274-334)||(45412333-45412393)
chr2 (276-332)||(27553809-27553865)
chr2 (276-334)||(1389233-1389291)
chr2 (279-334)||(28847336-28847391)
chr2 (273-334)||(1394854-1394915)
chr2 (275-332)||(12812835-12812892)
[»] chr7 (6 HSPs)
chr7 (275-328)||(9805432-9805485)
chr7 (276-332)||(35080283-35080339)
chr7 (275-332)||(35081603-35081660)
chr7 (275-334)||(12961983-12962042)
chr7 (275-325)||(23621990-23622040)
chr7 (286-328)||(36903529-36903571)
[»] chr6 (8 HSPs)
chr6 (275-334)||(20409066-20409125)
chr6 (273-334)||(20410217-20410278)
chr6 (273-334)||(16864492-16864553)
chr6 (279-332)||(22417661-22417714)
chr6 (275-334)||(6977026-6977085)
chr6 (276-334)||(6978137-6978195)
chr6 (273-331)||(12181592-12181650)
chr6 (275-334)||(16859335-16859394)
[»] scaffold0047 (1 HSPs)
scaffold0047 (291-334)||(32417-32460)
[»] scaffold0005 (1 HSPs)
scaffold0005 (291-334)||(4073-4116)
[»] scaffold0515 (1 HSPs)
scaffold0515 (286-332)||(3649-3695)
[»] scaffold0306 (1 HSPs)
scaffold0306 (286-332)||(3649-3695)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 30336187 - 30335930
Alignment:
Q  1 cgtcaatttgaacactgtgagaagaattagccaaattcaaagtaaaagaagaaccggaagaaattattacaaaagatataattcatgttataccttgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30336187 cgtcaatttgaacactgtgagaagaattagccaaattcaaagcaaaagaagaaccagaagaaattattacaaaagatataattcatgttataccttgatt 30336088  T
Q  101 ccgatttggttattacctgcattggaatgaatattagagagggagcttttagaagaaaacaaatatnnnnnnnnnnnnnnnnacggttctttgttgttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                || |   ||| ||||| |    
T  30336087 ccgatttggttattacctgcattggaatgaatattagagagagagcttttagaagaaaacaaatatgagagagagagagagaacag---ttttttgttct 30335991  T
Q  201 tacttattggtgcggtgagcatggaagagaacgggttttaaggaaaggctaataaattttg 261  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  30335990 tacttattggtgcggtgagcgtggaagagaacgagttttaaggaaaggctaataaattttg 30335930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 3598980 - 3598922
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  3598980 ggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggccccctatt 3598922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 124590 - 124531
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||||||||||||||||| | ||| ||| |||||||||||||||||||||||||    
T  124590 aaaggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggcccccta 124531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 3597322 - 3597381
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||    
T  3597322 aggctaaactacagttttggccccctaagtttactaatgttgcgattttggccccttatt 3597381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 17414544 - 17414602
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||| |||||||||||| ||||||||  ||||| ||||||||||||||||||||    
T  17414544 ggctaaactgcagttttgaccctctaacttttacaatggtgcgattttggccccctatt 17414602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 5504194 - 5504138
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||    
T  5504194 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgacccccta 5504138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 17415747 - 17415695
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccc 328  Q
    ||||||||| |||||||||||||||||||||  ||||| ||||||||||||||    
T  17415747 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccc 17415695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 8061853 - 8061912
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||||| ||||||| |||||||||||||   |||| ||||||||||||||||||    
T  8061853 aaaggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 8061912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 5502916 - 5502973
Alignment:
Q  274 aaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||||||||||| ||| ||| ||| |||||||||| ||||||||||||||    
T  5502916 aaggctaaactacagttttga-cccttaagtttgccaatgttgcaattttggcccccta 5502973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 121348 - 121405
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||||||||||| | |||| ||| |||||||||| |||||| |||||||    
T  121348 aggctaaactacagttttgacactctaaatttgccaatgttgcaattttgacccccta 121405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 24242016 - 24242073
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||| |||||||||||||||||||||  ||| | |||||||||| |||||||    
T  24242016 aggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttgacccccta 24242073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 12406051 - 12406097
Alignment:
Q  286 cagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||  |||||||||||| |||| ||||||||||||||||||||    
T  12406051 cagttttagccccctaactttcccaaagttgcgattttggcccccta 12406097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 3333996 - 3333959
Alignment:
Q  295 ccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  3333996 ccccctaacttttccaaagttgcgattttggcccccta 3333959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 8067509 - 8067452
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||| |||||||  ||||||||||||   |||| ||||||||||||||||||    
T  8067509 aggctaaactgcagttttacccccctaactttcagaatggtgcgattttggcccccta 8067452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 14190546 - 14190489
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||| |||||||||||||||||||||   || | ||||||||||| ||||||    
T  14190546 aggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 14190489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 14189664 - 14189720
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||| |||||||||||||||||||||   || | ||||||||||| ||||||    
T  14189664 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 14189720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 22682365 - 22682106
Alignment:
Q  1 cgtcaatttgaacactgtgagaagaattagccaaattcaaagtaaaagaagaaccggaagaaattattacaaaagatataattcatgttataccttgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22682365 cgtcaatttgaacactgtgagaagaattagccaaattcaaagcaaaagaagaaccagaagaaattattacaaaagatataattcatgttataccttgatt 22682266  T
Q  101 ccgatttggttattacctgcattggaatgaatattagagagggagcttttagaagaaaacaaatat--nnnnnnnnnnnnnnnnacggttctttgttgtt 198  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                  || ||| |||   |||    
T  22682265 ccgatttggttattacctgcattggaatgaatattagagagagagcttttagaagaaaacaaatatgagagagagagagagagaacagtttttt---gtt 22682169  T
Q  199 gttacttattggtgcggtgagcatggaagagaacgggttttaaggaaaggctaataaattttg 261  Q
     ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  22682168 cttacttattggtgcggtgagcgtggaagagaacgagttttaaggaaaggctaataaattttg 22682106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 8747690 - 8747747
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  8747690 aggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggcccccta 8747747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 40168638 - 40168697
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| |||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  40168638 aggctaaactgcagttttgaccccctaacttttacaatggtgcgattttggccccctatt 40168697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 8749105 - 8749048
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||    
T  8749105 aggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggcccccta 8749048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 40169836 - 40169779
Alignment:
Q  277 gctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||| |||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  40169836 gctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctatt 40169779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 33997954 - 33997898
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||    
T  33997954 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgacccccta 33997898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 8897012 - 8896955
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||||||||||| |||||| ||| |||||||| ||||||||| ||||||    
T  8897012 aggctaaactacagttttgactccctaagtttgccaatgttacgattttggtccccta 8896955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 55986367 - 55986309
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||| ||||||| |||||||||||||  ||||| |||||||||| |||||||||    
T  55986367 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttgaccccctatt 55986309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 48157736 - 48157680
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||| |||||||||||||||||||||   || | ||||||||||||||||||    
T  48157736 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggcccccta 48157680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 334
Target Start/End: Complemental strand, 14835626 - 14835583
Alignment:
Q  291 ttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||||||||||  || ||||||||||||||||||||||    
T  14835626 ttgaccccctaactttataaaagttgcgattttggccccctatt 14835583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 25909497 - 25909543
Alignment:
Q  286 cagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||| ||||||||||||| |||| |||| |||||||||||||||    
T  25909497 cagttttaaccccctaacttttccaaagttgtgattttggcccccta 25909543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 49185581 - 49185626
Alignment:
Q  286 cagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  49185581 cagttttaaccccctaactttcccaa-gttgcgattttggcccccta 49185626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 2836908 - 2836953
Alignment:
Q  285 acagttttgaccccctaactttaccaatgttgcgattttggccccc 330  Q
    |||||||| ||||||||||||| |||| | ||||||||||||||||    
T  2836908 acagttttaaccccctaacttttccaaagctgcgattttggccccc 2836953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 31435912 - 31435852
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||||||||||||||| |||  ||  ||| ||||||||||||||||| |||||||||    
T  31435912 aaaggctaaactacagttttggccct-tatgtttgccaatgttgcgattttgaccccctatt 31435852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 40970953 - 40971032
Alignment:
Q  87 gttataccttgattccgatttggttattacctgcattggaatgaatattagagagggagcttttagaagaaaacaaatat 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40970953 gttataccttgattccgatttggttattacctgcattggaatgaatattagagagagagcttttagaagaaaacaaatat 40971032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 40971783 - 40971835
Alignment:
Q  209 ggtgcggtgagcatggaagagaacgggttttaaggaaaggctaataaattttg 261  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40971783 ggtgcagtgagcatggaagagaacgggttttaaggaaaggctaataaattttg 40971835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 38612218 - 38612277
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  38612218 aggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctatt 38612277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 38613476 - 38613417
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  38613476 aggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctatt 38613417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 13883929 - 13883878
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 324  Q
    |||||||||||||||||||||||||| ||| |||  ||||||||||||||||    
T  13883929 aaaggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttg 13883878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 23039586 - 23039527
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| ||||||| ||||| |||||||  ||||| ||||||||||| ||||||||    
T  23039586 aggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggtcccctatt 23039527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 28349602 - 28349565
Alignment:
Q  295 ccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  28349602 ccccctaactttcccaaagttgcgattttggcccccta 28349565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 23039122 - 23039182
Alignment:
Q  274 aaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||| | ||||||| |||||||||||||  ||||| ||  ||||||||||||||||    
T  23039122 aaggctaaattgcagttttaaccccctaactttcacaatggtgtaattttggccccctatt 23039182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 46312065 - 46312121
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 46312121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 46313333 - 46313274
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| |||||||||||||||||||||  ||| | ||||||||||||||||||||    
T  46313333 aggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttggccccctatt 46313274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 14512719 - 14512669
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgatttt 323  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  14512719 aaaggctaaactacagttttggccccctaagtttactaatgttgcgatttt 14512669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 46524537 - 46524595
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccct 331  Q
    |||| |||||||||||||||| |||||||| |||||||||||||| ||||||| |||||    
T  46524537 aaagactaaactacagttttggccccctaagtttaccaatgttgcaattttggtcccct 46524595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 2999491 - 2999539
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 324  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  2999491 ggctaaactacagttttgaccctctaactttgtcaatgttgcgattttg 2999539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 46525900 - 46525844
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||| ||||||||||| |||||||| ||| |||||||||||||||||||| ||||    
T  46525900 ggctaatctacagttttggccccctaagtttgccaatgttgcgattttggcctccta 46525844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 3377511 - 3377557
Alignment:
Q  286 cagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||  |||||||||||| |||| ||||||||||||||||||||    
T  3377511 cagttttagccccctaacttttccaaagttgcgattttggcccccta 3377557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 50226390 - 50226448
Alignment:
Q  274 aaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||| || |||||||||  ||||||||||||  ||| ||||||||||||||||||||    
T  50226390 aaggcttaattacagttttagccccctaactttttcaaagttgcgattttggcccccta 50226448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 3000272 - 3000223
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 324  Q
    |||||||||||||||||||||||| ||| |||   |||||||||||||||    
T  3000272 aggctaaactacagttttgaccccttaattttgttaatgttgcgattttg 3000223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 50380031 - 50379974
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||| |||||||||||||||||||||   || | ||||||||||| ||||||    
T  50380031 aggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 50379974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 26722533 - 26722591
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  26722533 ggctaaactacagttttggccccctaagtttaccaatgttgcgattttggccccctatt 26722591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 26723965 - 26723904
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||    
T  26723965 aaaggctaaactacagttttggccccctaagtttactaatgttgcaattttggccccctatt 26723904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 10584140 - 10584084
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  10584140 ggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggcccccta 10584084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 32829740 - 32829796
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||    
T  32829740 ggctaaactacagttttgaccccctaagtttgccaattttgcgattttggcccccta 32829796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 51220662 - 51220604
Alignment:
Q  274 aaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||||||||||||||| ||| |||  ||||||||||||||| ||||||||    
T  51220662 aaggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttagcccccta 51220604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 51219462 - 51219518
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||||||||||| ||||| |||  ||||||||| ||||||||||||||    
T  51219462 ggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggcccccta 51219518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 21326319 - 21326378
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||||||| |||||||||| ||| ||||||||| |||| ||||||| ||||||||    
T  21326319 aggctaaactacacttttgaccccttaagtttaccaatattgcaattttggtcccctatt 21326378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 32831151 - 32831100
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttg 324  Q
    |||||||||||||||||||||||||||||  |||  ||||||||||||||||    
T  32831151 aaaggctaaactacagttttgaccccctatgtttgtcaatgttgcgattttg 32831100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 54539108 - 54539167
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| ||||||| |||||||||||||  ||||| || |||||||||||||||||    
T  54539108 aggctaaactgcagttttaaccccctaactttcacaatggtgtgattttggccccctatt 54539167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 54539557 - 54539498
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| ||||||| ||||| |||||||  ||||| ||||||||||||||||||||    
T  54539557 aggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggccccctatt 54539498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 48053123 - 48053184
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||| |||||| ||||||| |||| ||||||||  ||||| ||||||||||||||||||||    
T  48053123 aaaggttaaactgcagttttaaccctctaactttcacaatggtgcgattttggccccctatt 48053184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 53157234 - 53157182
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccc 328  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||| ||||||    
T  53157234 aggctaaactacagttttga-cccctaagtttgccaatgttgcgattctggccc 53157182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 33329926 - 33329880
Alignment:
Q  286 cagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||| |||||| |||||| |||| ||||||||||||||||||||    
T  33329926 cagttttaaccccccaactttcccaacgttgcgattttggcccccta 33329880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 44586090 - 44586044
Alignment:
Q  286 cagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||  |||||||||||| |||| ||||||||||||||||||||    
T  44586090 cagttttagccccctaactttcccaaagttgcgattttggcccccta 44586044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 51315788 - 51315742
Alignment:
Q  286 cagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||  |||||||||||| |||| ||||||||||||||||||||    
T  51315788 cagttttagccccctaactttcccaaagttgcgattttggcccccta 51315742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 10851912 - 10851971
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  10851912 aggctaaactacagttttgaccccctaactttatcaatgttgcgattttaaccccctatt 10851971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 27552451 - 27552508
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||    
T  27552451 aggctaaactacagttttgaccccctaaatttgccaatgttgcgattttggctcccta 27552508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 45413536 - 45413477
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| |||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  45413536 aggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctatt 45413477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 28851730 - 28851672
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||    
T  28851730 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttgaccccctatt 28851672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 10853205 - 10853145
Alignment:
Q  274 aaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||| |||||||||||||||||||| |||||||| |||||||||||||||| |||| ||||    
T  10853205 aaggataaactacagttttgaccccttaactttatcaatgttgcgattttgaccccttatt 10853145  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 45412333 - 45412393
Alignment:
Q  274 aaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||||| |||||||||||||||||||||  ||||| |||||||||| |||||||||    
T  45412333 aaggctaaactgcagttttgaccccctaactttcacaatggtgcgattttgaccccctatt 45412393  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 27553865 - 27553809
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||||||| ||||||||| ||| | |||||||||||||||||| ||||    
T  27553865 ggctaaactacagttttaaccccctaagtttgctaatgttgcgattttggcctccta 27553809  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 1389233 - 1389291
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||| ||||||| |||||||||||||   |||| ||||||||||||||||||||    
T  1389233 ggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggccccctatt 1389291  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 28847336 - 28847391
Alignment:
Q  279 taaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||| ||||||||||||||||| |||  ||||||||| ||||||| ||||||||    
T  28847336 taaactgcagttttgaccccctaattttcacaatgttgcaattttggtcccctatt 28847391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 1394915 - 1394854
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||| || ||||||| |||||||||||||   |||| ||||||||| ||||||||||    
T  1394915 aaaggctaatctgcagttttaaccccctaactttcagaatggtgcgattttagccccctatt 1394854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 12812835 - 12812892
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||| |||||||||||||| | ||| ||| | ||||||| |||||||||||||||    
T  12812835 aggctaagctacagttttgacctcttaagtttgctaatgttgagattttggcccccta 12812892  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 9805485 - 9805432
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccc 328  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  9805485 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggccc 9805432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 35080283 - 35080339
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||    
T  35080283 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 35080339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 35081660 - 35081603
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||||||||||||||||||||| |||  |||||||||||||||||| |||||    
T  35081660 aggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgcccta 35081603  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 12961983 - 12962042
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| ||||||| |||||||||||||  ||||| ||||||||||||||||||||    
T  12961983 aggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggccccctatt 12962042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 325
Target Start/End: Complemental strand, 23622040 - 23621990
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttgg 325  Q
    ||||||||||||||||||| || ||||| ||| ||||||||||||||||||    
T  23622040 aggctaaactacagttttggcctcctaagtttgccaatgttgcgattttgg 23621990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 36903571 - 36903529
Alignment:
Q  286 cagttttgaccccctaactttaccaatgttgcgattttggccc 328  Q
    ||||||| |||||||||||||  ||||||||||||||||||||    
T  36903571 cagttttaaccccctaactttttcaatgttgcgattttggccc 36903529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 20409066 - 20409125
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| |||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  20409066 aggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctatt 20409125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 20410278 - 20410217
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||||| |||||||||||||||||||||  ||||| |||||||||| |||||||||    
T  20410278 aaaggctaaactgcagttttgaccccctaacttttacaatggtgcgattttgaccccctatt 20410217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 16864553 - 16864492
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||||| ||||||| |||||||||||||  ||||| ||||||||||| ||||||||    
T  16864553 aaaggctaaactgcagttttaaccccctaacttttacaatggtgcgattttggtcccctatt 16864492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 22417661 - 22417714
Alignment:
Q  279 taaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||||||||||||||||||| ||| | |||||| ||||||||||||||||    
T  22417661 taaactacagttttgaccccctaagtttgctaatgttacgattttggcccccta 22417714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 6977026 - 6977085
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| ||||||| |||||||||||||  ||||| ||| ||||||||||||||||    
T  6977026 aggctaaactgcagttttaaccccctaactttcacaatggtgcaattttggccccctatt 6977085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 6978195 - 6978137
Alignment:
Q  276 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    ||||||||| ||||||| |||||||||||||  ||||| |||||||||||| |||||||    
T  6978195 ggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggctccctatt 6978137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 12181592 - 12181650
Alignment:
Q  273 aaaggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccct 331  Q
    |||||||||||| ||||||||||| |||||||||   ||||||| ||||||||||||||    
T  12181592 aaaggctaaactgcagttttgacctcctaactttgtaaatgttgggattttggccccct 12181650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 16859335 - 16859394
Alignment:
Q  275 aggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||| || |||| |||||||||||||  ||||| |||||||||| |||||||||    
T  16859335 aggctaaactgcaattttaaccccctaactttcacaatggtgcgattttgaccccctatt 16859394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 334
Target Start/End: Complemental strand, 32460 - 32417
Alignment:
Q  291 ttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||||||||||  || ||||||||||||||||||||||    
T  32460 ttgaccccctaactttataaaagttgcgattttggccccctatt 32417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 4073 - 4116
Alignment:
Q  291 ttgaccccctaactttaccaatgttgcgattttggccccctatt 334  Q
    |||||||||||||||||  || ||||||||||||||||||||||    
T  4073 ttgaccccctaactttataaaagttgcgattttggccccctatt 4116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 3649 - 3695
Alignment:
Q  286 cagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||  |||||||||||| |||| ||||||||||||||||||||    
T  3649 cagttttagccccctaactttcccaaagttgcgattttggcccccta 3695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 3649 - 3695
Alignment:
Q  286 cagttttgaccccctaactttaccaatgttgcgattttggcccccta 332  Q
    |||||||  |||||||||||| |||| ||||||||||||||||||||    
T  3649 cagttttagccccctaactttcccaaagttgcgattttggcccccta 3695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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