View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16139_low_5 (Length: 358)
Name: NF16139_low_5
Description: NF16139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16139_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 34754780 - 34754441
Alignment:
| Q |
11 |
agaaaatgtactcaagagtgtgagatcgacgggtatgtgattccagaaggagcactaatacttttcaatgtctgggcagtgggaagagacccaaaatatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34754780 |
agaaaatgtactcaagagtgtgagatcgacgggtatgtgattccagaaggagcactaatacttttcaatgtctgggcagtgggaagagacccaaaatatt |
34754681 |
T |
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| Q |
111 |
gggtaaagccattggaatttcgtccagagaggtttatagaaaatgttggtgaaggtgaagcagcttcaattgatcttaggggtcaacatttcacacttct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
34754680 |
gggtaaagccattggaatttcgtccagagaggtttatagaaaatgttggtgaaggtgaagcagcttcaattgatcttaggggtcagcatttccaacttct |
34754581 |
T |
|
| Q |
211 |
accatttgggtctggaagaaggatgtgtcctggagtcaatttggcaacagcaggaatggcaacactgcttgcatctattattcagtgttttgatctacaa |
310 |
Q |
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| T |
34754580 |
accatttgggtccggaaggagaatgtgtcctggagtcaatttggctactgcaggaatggccacactgcttgcatctattatccagtgctttgatctgcag |
34754481 |
T |
|
| Q |
311 |
gtaccaggcccacatggacaaatattgaaaggtgatgatg |
350 |
Q |
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| T |
34754480 |
gtaccaggcccacaaggacaaatattgaaaggtgatgatg |
34754441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 34781428 - 34781764
Alignment:
| Q |
10 |
aagaaaatgtactcaagagtgtgagatcgacgggtatgtgattccagaaggagcactaatacttttcaatgtctgggcagtgggaagagacccaaaatat |
109 |
Q |
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| T |
34781428 |
aagaaaatgtacacaagaatgtgagatcgacgggtatgtggttccagaaggagcactaatacttttcaatgtctgggcagtgggaagagacccaaaatat |
34781527 |
T |
|
| Q |
110 |
tgggtaaagccattggaatttcgtccagagaggtttatagaaaatgttggtgaaggtgaagcagcttcaattgatcttaggggtcaacatttcacacttc |
209 |
Q |
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| T |
34781528 |
tgggtaaagccattggaatttcgtccagagaggttcatagaaaatgttggtgaaggtgaagcagcttcaattgatcttaggggtcaacatttcacacttc |
34781627 |
T |
|
| Q |
210 |
taccatttgggtctggaagaaggatgtgtcctggagtcaatttggcaacagcaggaatggcaacactgcttgcatctattattcagtgttttgatctaca |
309 |
Q |
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| T |
34781628 |
taccatttgggtctggaagaaggatgtgtcctggagtcaatttggctactgcaggaatggccacaatgattgcatctattatccaatgcttcgatctcca |
34781727 |
T |
|
| Q |
310 |
agtaccaggcccacatggacaaatattgaaaggtgat |
346 |
Q |
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|||||| || | ||||||| |||||||||| |||||| |
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| T |
34781728 |
agtacctggtcaacatggagaaatattgaatggtgat |
34781764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 34762765 - 34762419
Alignment:
| Q |
11 |
agaaaatgtactcaagagtgtgagatcgacgggtatgtgattccagaaggagcactaatacttttcaatgtctgggcagtgggaagagacccaaaatatt |
110 |
Q |
| |
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|||||||| || |||||||||||||| | || |||||||| || || ||||| | |||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
34762765 |
agaaaatgcaccgaagagtgtgagatcaatggttatgtgatcccggagggagctttgatacttttcaatgtatggcaagtgggaagagacccaaaatatt |
34762666 |
T |
|
| Q |
111 |
gggtaaagccattggaatttcgtccagagaggtttatagaaaatgtt------ggtgaaggtgaagcagcttcaattgatcttaggggtcaacatttcac |
204 |
Q |
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||| ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34762665 |
gggaaaaaccattggaatttcgtccagagaggttcttagaaaatgcaagccaaggtgaaggtgaagcagcttcaattgatcttaggggtcaacatttcac |
34762566 |
T |
|
| Q |
205 |
acttctaccatttgggtctggaagaaggatgtgtcctggagtcaatttggcaacagcaggaatggcaacactgcttgcatctattattcagtgttttgat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
34762565 |
acttctaccatttgggtctggaagaaggatgtgtcctggagtcaatttggcaacagcaggaatggcaacactactttcatcaattattcagtgttttgat |
34762466 |
T |
|
| Q |
305 |
ctacaagtaccaggcccacatggacaaatattgaaaggtgatgatgt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34762465 |
ctacaagtaccaggcccacatggacaaatattgaaaggtgatgatgt |
34762419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 23244639 - 23244718
Alignment:
| Q |
164 |
ggtgaagcagcttcaattgatcttaggggtcaacatttcacacttctaccatttgggtctggaagaaggatgtgtcctgg |
243 |
Q |
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||||||| || |||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||| |
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| T |
23244639 |
ggtgaaggagattcaattgatgttaggggacaacattttcaacttctaccatttggatctggaagaagaatgtgtcctgg |
23244718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 246
Target Start/End: Complemental strand, 9381276 - 9381242
Alignment:
| Q |
212 |
ccatttgggtctggaagaaggatgtgtcctggagt |
246 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
9381276 |
ccatttgggtcaggaagaaggatgtgtcctggagt |
9381242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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