View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16139_low_7 (Length: 265)
Name: NF16139_low_7
Description: NF16139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16139_low_7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 34781199 - 34781457
Alignment:
| Q |
7 |
gtatgcaggattttttctctgcaggaacagactccaccgccgtgtctacagaatggactttatcagagctcatcaacaatcctagagtgttgaagaaagc |
106 |
Q |
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| T |
34781199 |
gtatgcaggattttttctctgcaggaacagactccaccgccgtgtctacagaatggactttatcagagctcatcaataatcctagagtgttgaagaaagc |
34781298 |
T |
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| Q |
107 |
tcgagaggagattgactctgttgtgggaaaagatagactagttgatgaatcagatgttcagaatcttccttacattaaagccatcgtaaaagaagcattt |
206 |
Q |
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| T |
34781299 |
tcgagaggagattgactctgttgtgggaaaagatagactggttgatgaatcagatgttcagaatcttccttacattaaagccatcgtaaaagaagcattt |
34781398 |
T |
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| Q |
207 |
cgtttgcacccaccactacctgtagtcaagagaaaatgtactcaagcgtgtgagatcga |
265 |
Q |
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| T |
34781399 |
cgcttgcacccaccactacctgtagtcaaaagaaaatgtacacaagaatgtgagatcga |
34781457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 34755010 - 34754752
Alignment:
| Q |
7 |
gtatgcaggattttttctctgcaggaacagactccaccgccgtgtctacagaatggactttatcagagctcatcaacaatcctagagtgttgaagaaagc |
106 |
Q |
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| T |
34755010 |
gtatgcaggatttcttctctgcggggacagattccacggctgtgtcaactgaatggactttatcagagctcatcaacaatcctagagtattgaagaaggc |
34754911 |
T |
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| Q |
107 |
tcgagaggagattgactctgttgtgggaaaagatagactagttgatgaatcagatgttcagaatcttccttacattaaagccatcgtaaaagaagcattt |
206 |
Q |
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| T |
34754910 |
tcgagaagagattgactctgttgtgggaaaagatggactagttgatgaatcagatgttcagaatcttccttacattagagccgtcgtgaaggaagcattc |
34754811 |
T |
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| Q |
207 |
cgtttgcacccaccactacctgtagtcaagagaaaatgtactcaagcgtgtgagatcga |
265 |
Q |
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| T |
34754810 |
cgcatgcacccaccactacctgtagtcaagagaaaatgtactcaagagtgtgagatcga |
34754752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 34762992 - 34762739
Alignment:
| Q |
10 |
tgcaggattttttctctgcaggaacagactccaccgccgtgtctacagaatggactttatcagagctcatcaacaatcctagagtgttgaagaaagctcg |
109 |
Q |
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| T |
34762992 |
tgcaggatttcttctctgcagggacagattccacagctgtggcaacagaatggactttggcagagctcatcaacaatccaagagtatggaagaaagcaca |
34762893 |
T |
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| Q |
110 |
agaggagattgactctgttgtgggaaaagatagactagttgatgaatcagatgttcagaatcttccttacattaaagccatcgtaaaagaagcatttcgt |
209 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| || || || | ||| ||| |
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| T |
34762892 |
agaagagattgactctgttgtgggaaaagatagactagttgacgaatcagatgttcagaatcttccatacattcgcgccatggtgaaggaggtattccgt |
34762793 |
T |
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| Q |
210 |
ttgcacccaccactacctgtagtcaagagaaaatgtactcaagcgtgtgagatc |
263 |
Q |
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| T |
34762792 |
ttgcacccaccactacccgtggtgaagagaaaatgcaccgaagagtgtgagatc |
34762739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 9381572 - 9381491
Alignment:
| Q |
139 |
atagactagttgatgaatcagatgttcagaatcttccttacattaaagccatcgtaaaagaagcatttcgtttgcacccacc |
220 |
Q |
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| T |
9381572 |
atagactagtagatgaatctgacggtccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccacc |
9381491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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