View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-1 (Length: 1050)
Name: NF1614-Insertion-1
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 45310357 - 45310773
Alignment:
| Q |
8 |
aaaataacacgatagtagctgatggaacagaacaaaagaacatgccaacaggaattgttgttcaaaactgtgtcattttggcagaggctgaattgttacg |
107 |
Q |
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| T |
45310357 |
aaaataacacgatagtagctgatggaacagaacaaaagaacatgccaacaggaattgttgttcaaaactgtgtcattttggcagaggctgaattgttacg |
45310456 |
T |
|
| Q |
108 |
aaacaagttgaaagtaaagtcttacttggcaagaccatggaaggaatattcaagagctgtgtttattgagaatgtgattggtgatgttattcagccagaa |
207 |
Q |
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| T |
45310457 |
aaacaagttgaaagtaaagtcttacttggcaagaccatggaaggaatattcaagagctgtgtttattgagaatgtgataggtgatgttattcagccagaa |
45310556 |
T |
|
| Q |
208 |
gggtatattccatggacaggagaatatccaaatattgagaactcttacatggctgagtttgggaacagtggagaaggtgctggtgttgaaagaagagtgg |
307 |
Q |
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| T |
45310557 |
gggtatattccatggacaggagaatatccaaatattgagaactcttacatggctgagtttgggaacagtggagaaggtgctggtgttgaaagaagagtgg |
45310656 |
T |
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| Q |
308 |
attgggctaagggactcattagcaaggaagaagcttttcaatttactgctgctcaatttattcaggctaacacatggttgcctataactggcattccttt |
407 |
Q |
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| T |
45310657 |
attgggctaagggactcattagcaaggaagaagcttttcaatttactgctgctcaatttattcaggctaacacatggttgcctataactggcattccttt |
45310756 |
T |
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| Q |
408 |
ttataatggcttcataa |
424 |
Q |
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| T |
45310757 |
ttataatggcttcataa |
45310773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 642 - 917
Target Start/End: Original strand, 45310894 - 45311175
Alignment:
| Q |
642 |
gatcagctggtaatacaaactatcgcgctttttccattttcagcttagccgaaacgcgaaagaagcttagagattctttcaattcactacttcagtcgaa |
741 |
Q |
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| T |
45310894 |
gatcagctggtaatacaaactatcgcgctttttccattttcagcttagccgaaacgcgaaagaagcttagagattctttcaattcactacttcagtcgaa |
45310993 |
T |
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| Q |
742 |
gatnnnnnnnnnnn-----tgagaattaatggtagatttatgaacttccgttgtctttttcagttgcggaagcgattcgaatcaaaatccgaactctcac |
836 |
Q |
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| T |
45310994 |
gataaaaaataaaaaaatatgagaattaatggtagatttatgaacttccgttatctttttcagttgcggaagcgattcgaatcaaaatccgaactctcac |
45311093 |
T |
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| Q |
837 |
ttccgaatttccggtttcgtctttactcttccggtaacttttcgtttatcctatctatctatttactc-aaattttgtaagt |
917 |
Q |
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| T |
45311094 |
ttccgaatttccggtttcgtctttactcttccggtaacttttcgtttatcctatctatctatttattcaaaattttgtaagt |
45311175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 576 - 623
Target Start/End: Original strand, 45310847 - 45310894
Alignment:
| Q |
576 |
gaagcgaaggagtattttcgtaaacagggagaataggctggcccaacg |
623 |
Q |
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| T |
45310847 |
gaagcgaaggggtattttcgtaaacagggagaataggctggcccaacg |
45310894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 38582524 - 38582486
Alignment:
| Q |
22 |
gtagctgatggaacagaacaaaagaacatgccaacagga |
60 |
Q |
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| T |
38582524 |
gtagctgatggaacagtccaaaagaacatgccaacagga |
38582486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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