View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614-Insertion-10 (Length: 694)
Name: NF1614-Insertion-10
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 31 - 590
Target Start/End: Complemental strand, 5099500 - 5098941
Alignment:
| Q |
31 |
tacaggactaagagaaataaactctcatcacaagtggagagtaggttttaaacttgcaattgcggctacaatataaggactttgaggtcttcacaactac |
130 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5099500 |
tacaggactaaaagaactaaactctcatcacaagtggagagtaggttttaaacttgcaattgcggctacaatataaggactttgagttcttcacaactac |
5099401 |
T |
|
| Q |
131 |
atcacatctgcaatttcgaccatattttgcaacaatataaaagttcacaactaaactagaccattatttaataccattttgcatacaaaaaataataata |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5099400 |
atcacatctgcaatttcgaccatattttgcaacaatataaaagttcacaactaaactagaccattatttaataccattttgcatacaaaaaataataata |
5099301 |
T |
|
| Q |
231 |
agctagaactttcacaagtactttgttggttgttgcaatacacacatttgtaattaagttgcaaacccaattaccattgatagaagtaagaaactaatca |
330 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5099300 |
agctagttccttcacaagtactttgttggttgttgcaatacacacatttgtaatcaagttgcaaacccaattaccattgatagaagtaagaaactaatca |
5099201 |
T |
|
| Q |
331 |
taaaagtatcattagttattatgacttaggtaaacttaaaattaactttttgtcctaaaaaaggacatcactatcttttggaaggagcataggatggtaa |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5099200 |
taaaagtatcattagttattatgacttaggtaaacttaaaattaactttttgtcctaaaaaaggacatcactatcttttggaaggagcataggatggtaa |
5099101 |
T |
|
| Q |
431 |
tgcaaggcttccataatttttctcttatcacatcctttctctcattttcactagcagacacccttgcacacaattgccaactggcaatattgattcattc |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5099100 |
tgcaaggcttccataatttttctcttatcacatcctttctctcattttcactagcagacacccttgcacacaattgccaactggcaatattgattcattc |
5099001 |
T |
|
| Q |
531 |
acataagagataaaataagaagccaaaaagattgtacaaaaggacacacatcagtttaga |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5099000 |
acataagagataaaataagaagccaaaaagattgtacaaaaggacacacatcagtttaga |
5098941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 694
Target Start/End: Complemental strand, 5098861 - 5098828
Alignment:
| Q |
661 |
gttgagaaaaactatataataagacttctacgcc |
694 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5098861 |
gttgagaaaaactatataataagacttctacgcc |
5098828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University