View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614-Insertion-11 (Length: 672)

Name: NF1614-Insertion-11
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614-Insertion-11
NF1614-Insertion-11
[»] chr1 (1 HSPs)
chr1 (9-672)||(48123361-48124024)


Alignment Details
Target: chr1 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 9 - 672
Target Start/End: Original strand, 48123361 - 48124024
Alignment:
Q  9 aaatggaggctgataagtatcctccaagtcttgctttgtcacctgcaaaaatctccgtaaatatctacatggtgatatatgattggatgcagttgtaaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48123361 aaatggaggctgataagtatcctccaagtcttgctttgtcacctgcgaaaatctccgtaaatatctacatggtgatatatgattggatgcagttgtaaaa 48123460  T
Q  109 aatatttaacacgttcggtgatagttaagtcattctgtcataatgatccaattgcttatgcatttttggcagcatattaaatttcatggcctaattttgt 208  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48123461 aatatttaacacgttcggtgatagttaagttattctgtcataatgatccaattgcttatgcatttttggcagcatattaaatttcatggtctaattttgt 48123560  T
Q  209 tatcttaattaccttagcatcaaaatggaaccgatcaacgcctttccaattatcaacatcataagcagtataatgcttacaacagctagaaaccttaagc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48123561 tatcttaattaccttagcatcaaaatggaaccgatcaacgcctttccaattatcaacatcataagcagtataatgcttacaacagctagaaaccttaagc 48123660  T
Q  309 ctatcacctttagcacttgcttcatcaccaacttcttgtagtccacggacataatttacagcatatctagaaacaaccaaaggatcttcccctggagttt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48123661 ctatcacctttagcacttgcttcatcaccaacttcttgtagtccacggacataatttacagcatatctagaaacaaccaaaggatcttcccctggagttt 48123760  T
Q  409 cttgtccacgcccccatctcggatcgcgaaaaacattcacattagggctccaaaatgtcaaaccagccagatccacattgtacatagctctagcttcatt 508  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48123761 cttgtccacgcccccacctcggatcgcgaaaaacattcacattagggctccaaaatgtcaaaccagccagatccacattgtacatagctctagcttcatt 48123860  T
Q  509 tgacacaacttgtcccattgtgtaccataatgtttcattaaaactagcagctgatagtatcactgctggaaagctagtagcaccgggtaccctgctatcg 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48123861 tgacacaacttgtcccattgtgtaccataatgtttcattaaaactagcagctgatagtatcactgctggaaagctagtagcaccgggtaccctgctatcg 48123960  T
Q  609 aaacgcgtccctggtcctacattagagacaccatgaagtgcctctgaccaccattcataagcag 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48123961 aaacgcgtccctggtcctacattagagacaccatgaagtgcctctgaccaccattcataagcag 48124024  T

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