View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-12 (Length: 602)
Name: NF1614-Insertion-12
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 7 - 602
Target Start/End: Original strand, 18517450 - 18518045
Alignment:
| Q |
7 |
aacacaagcattcattactcctaactcatcaaaagaaccaactttacctccccccattattttccccaatttcaaccacctaattccatctcttgaccta |
106 |
Q |
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| T |
18517450 |
aacacaagcattcattactcctaactcatcaaaagaaccaactttacctccccccattattttccccaatttcaaccacctaattccatctcttgaccta |
18517549 |
T |
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| Q |
107 |
gctatacctatgcaaaactctcccttttctttatcaaaggaatgataatacatccttaaatcaccatttccatgataaacaacttgtggtgaggaaataa |
206 |
Q |
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| T |
18517550 |
gctatacctatgcaaaactctcctttttccttatcaaaggaatgataatacatccttaaatcaccatttccatgatatacaacttgtggagatgaaataa |
18517649 |
T |
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| Q |
207 |
acaaagaatcccaatctttctctttaccgacatcgattaatgctccactatgatgctctccttcaattctagcccaatttctaccatcttgacttatagc |
306 |
Q |
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| T |
18517650 |
acaaagaatcccaatctttctctttaccgacatcgattaatgctccactatgatgctctccttcaattctagcccaatttctaccatcttgacttatagc |
18517749 |
T |
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| Q |
307 |
taacccaggtaatgacttcaaaatcttacctttaccgaaattctcgtgatttaaaccatttgggttatcaaaactaaactcgaaagaatgatcgcgaaac |
406 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18517750 |
taaaccaggtaatgacttcaaaatcttacctttaccgaaattctcatgatttaaaccatttgggttatcaaaactaaactcgaaagaatgatcacgaaac |
18517849 |
T |
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| Q |
407 |
tctacagattcagaaccgtatccggtgtaataaagccaataaacagcattagaacctctaaccctgtaactagacatgattaacaacccagaaggcctaa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
18517850 |
tctacagattcagaaccgtatccggtgtaataaagccaataaacagcattagaacctctaaccctgtaactagacatgattaacaatccagagggcctaa |
18517949 |
T |
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| Q |
507 |
ttccgcgagtatcgaaaccccaccaatctttaccacaattcatcacaaaaccaacatcagaacttgatttggcaggacctccactgcgttcccaat |
602 |
Q |
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| T |
18517950 |
ttccgcgagtatcgaaaccccaccaatctttaccacaattcatcacaaaaccaacatcagaacttgattttgcaggacctccaccgcgttcccaat |
18518045 |
T |
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