View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-13 (Length: 587)
Name: NF1614-Insertion-13
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-13 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 142 - 416
Target Start/End: Complemental strand, 9192718 - 9192444
Alignment:
| Q |
142 |
ttcttaggtttaaaaagagagagggcctgtatatagcatttaaaacactcgactaccaaggcataaagaagggacagagcattaaaatccatagtattag |
241 |
Q |
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| T |
9192718 |
ttcttaggtttaaaaagagagagggcctgtatatagcatttaaaacactcgactaccaaggcataaagaagggacagagcattaaaatccatagtattag |
9192619 |
T |
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| Q |
242 |
ctccatgctgttttttaccttattttaacccataacgccatgccctttaggcattgagttttaatgttgcatctctttgagaaactgcatggtttctagg |
341 |
Q |
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| T |
9192618 |
ctccatgctgttttttaccttattttaacccataacgccatgccctttaggcattgagttttaatgttgcatctctttgagaaactgcatggtttctagg |
9192519 |
T |
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| Q |
342 |
ttgtttaaaagtcaaatttaaccctatagtatgggggtattagtgtgtgataattaagggcagttttggtttgat |
416 |
Q |
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| T |
9192518 |
ttgcttaaaagtcaaatttaaccctatagtatgggggtattagtgtgtgataattaagggcagttttggtttgat |
9192444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 493 - 587
Target Start/End: Complemental strand, 9192367 - 9192274
Alignment:
| Q |
493 |
cagagaaattagcagaaagagtg-aaaatattaaatgaggcgaatctctttctgaaattgacagacagcaacatttaatacccacaccgtactcgt |
587 |
Q |
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| T |
9192367 |
cagagaaattagcagaaagagtggaaaatattaaatgagg-gaatctctttctgaaatcgacagacagcaaca-ttaatacccacaacgtactcgt |
9192274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 9192841 - 9192787
Alignment:
| Q |
7 |
attaaccattccttgttgagtttgtttgaaatattgagctttaagtaagaaaaaa |
61 |
Q |
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| T |
9192841 |
attaaccattccttgttgagtttgtttgaaatattgagctttaagtaagaaaaaa |
9192787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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