View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614-Insertion-14 (Length: 542)
Name: NF1614-Insertion-14
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-14 |
 | |
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| [»] chr6 (20 HSPs) |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 20)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 25 - 542
Target Start/End: Original strand, 5690544 - 5691060
Alignment:
| Q |
25 |
atgataggaaaaccctttcattaataaattggttttgtactacttttgcataatctttgaaataagactacatagtattctgcgcaagtttatggcatga |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5690544 |
atgataggaaaaccctttcattaataaattggttttgtactacttttgcataatctttgaaataagactacatagtattctgcgcaagtttatggcatga |
5690643 |
T |
|
| Q |
125 |
ttatttgttaatcatgcacaagttaaaggagtttttatgatggagatataaataaaactattctaatgaggtaatctccnnnnnnnttaattttaattca |
224 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
5690644 |
ttatttgttaatcatgcactagttaaaggagtttttatgatggagatataaataaaactcttctgatgaggtaatctccaaaaaaattaattttaattca |
5690743 |
T |
|
| Q |
225 |
tgcttagtgtaaaacttatttacactatcatctaaacaaccgattgccgaattcctttgattatgtcaaaatcattacctgtgcctttttccatagaaat |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5690744 |
tgcttagtgtaaaacttatttacactatcatctaat-aaccgattgccgaattcctttgattatgtcaaaatcattacctgtgcctttttccatagaaat |
5690842 |
T |
|
| Q |
325 |
ttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctca |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690843 |
ttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctca |
5690942 |
T |
|
| Q |
425 |
gattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaaca |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690943 |
gattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaaca |
5691042 |
T |
|
| Q |
525 |
ttgtacattagctcttgg |
542 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5691043 |
ttgtacattagctcttgg |
5691060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 300 - 526
Target Start/End: Original strand, 5074422 - 5074648
Alignment:
| Q |
300 |
tacctgtgcctttttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaagga |
399 |
Q |
| |
|
|||||| | ||||||||| | || ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
5074422 |
tacctgggtctttttccacacaagtttgatattgctgtttactaactcaatggaaactaaatttccttgataaaagcttgaaggaatgcatgttaaagga |
5074521 |
T |
|
| Q |
400 |
aatccatcccaagaaaaccatctcagattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatct |
499 |
Q |
| |
|
||||||| ||| |||| |||||||| |||| ||||||| | ||||||| ||||||||||| ||| ||||||||||||| ||||| ||||||||||||| |
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|
| T |
5074522 |
aatccattccatgaaagccatctcaaatttcttgaaagatgttcaaaatccccatcaagttgtacaccagcaagttgaagcaatcgaagtttttccatct |
5074621 |
T |
|
| Q |
500 |
tctcaaatgcttcagtattaaaacatt |
526 |
Q |
| |
|
||| |||||||| |||| ||||||||| |
|
|
| T |
5074622 |
tcttaaatgctttagtactaaaacatt |
5074648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 331 - 526
Target Start/End: Complemental strand, 5176177 - 5175982
Alignment:
| Q |
331 |
ttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagatttt |
430 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5176177 |
ttgctgttttctaactcgatggaaactaaatttccttgataaaagcttgaaggaatgcatgataaaggaaatccattccaagaaagccatctcagatttc |
5176078 |
T |
|
| Q |
431 |
ttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaacatt |
526 |
Q |
| |
|
||||||| | ||||||| ||||||||||| || ||||||||||||| ||| || ||||| | ||| ||||||||||||| |||| || |||||| |
|
|
| T |
5176077 |
ttgaaagatactcaaaatccccatcaagttgcacaccagcaagttgaagcaacctgagtttcttcatgttctcaaatgctttagtactataacatt |
5175982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 331 - 526
Target Start/End: Complemental strand, 5278004 - 5277809
Alignment:
| Q |
331 |
ttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagatttt |
430 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5278004 |
ttgctgttttctaactcgatggaaactaaatttccttgataaaagcttgaaggaatgcatgataaaggaaatccattccaagaaagccatctcagatttc |
5277905 |
T |
|
| Q |
431 |
ttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaacatt |
526 |
Q |
| |
|
||||||| | ||||||| ||||||||||| || ||||||||||||| ||| || ||||| | ||| ||||||||||||| |||| || |||||| |
|
|
| T |
5277904 |
ttgaaagatactcaaaatccccatcaagttgcacaccagcaagttgaagcaaactgagtttcttcatgttctcaaatgctttagtactataacatt |
5277809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 312 - 526
Target Start/End: Original strand, 5147617 - 5147831
Alignment:
| Q |
312 |
tttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaa |
411 |
Q |
| |
|
|||||| |||| ||||| ||||| ||||||||||||| |||||||||||||||| |||||||||||| || ||| |||||| ||||||||||| |||| |
|
|
| T |
5147617 |
tttccacagaagtttgatattgctattttctaactcaatggaaactaaatttcctagataaaagcttgtgggtatgcatgttagaggaaatccattccaa |
5147716 |
T |
|
| Q |
412 |
gaaaaccatctcagattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgctt |
511 |
Q |
| |
|
|||| ||||||||||||| | |||| | ||||||| ||||||||||| |||||||| |||||||| |||||||||| || |||||||| |||||||| |
|
|
| T |
5147717 |
gaaagccatctcagatttctcgaaatgtattcaaaatccccatcaagttgtactccagtaagttgaagcaatctcagtcttgtcatcttcttaaatgctt |
5147816 |
T |
|
| Q |
512 |
cagtattaaaacatt |
526 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
5147817 |
tagtactaaaacatt |
5147831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 324 - 511
Target Start/End: Complemental strand, 5396379 - 5396192
Alignment:
| Q |
324 |
tttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctc |
423 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||||| || ||||||||||||||||| ||| || ||||||||||| ||| |||||||| ||||||| |
|
|
| T |
5396379 |
tttgacattgctgtttactaactcaatggaaactaaattcccctgataaaagcttgaaggaatgcattttaaaggaaatgcattccaagaaagccatctc |
5396280 |
T |
|
| Q |
424 |
agattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgctt |
511 |
Q |
| |
|
| |||| ||||||| | ||||||| |||||||||| || ||||||||||||| || ||| ||||||| |||||||| ||||||| |
|
|
| T |
5396279 |
acatttcttgaaagatattcaaaatcaccatcaagttgtaaaccagcaagttgaagcagtctgagttttttcatcttcttgaatgctt |
5396192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 324 - 526
Target Start/End: Complemental strand, 5432730 - 5432528
Alignment:
| Q |
324 |
tttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctc |
423 |
Q |
| |
|
|||||| || |||||||||||||| | ||||||||||||| ||||||||||| ||| ||| ||| ||| ||| |||||||||| |||||||| ||||||| |
|
|
| T |
5432730 |
tttgacattactgttttctaactcgatggaaactaaatttgcttgataaaagtttgtaggtatgcatgataacggaaatccattccaagaaagccatctc |
5432631 |
T |
|
| Q |
424 |
agattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaac |
523 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||| | || |||||||||| || |||||| ||||| | |||||||| |||||| ||||| || ||| |
|
|
| T |
5432630 |
agatttcttgaaagatgttcaaaattcccatcaagctgcacaccagcaagttcaagcaatctgagtttcttcatcttcttaaatgcaacagtactataac |
5432531 |
T |
|
| Q |
524 |
att |
526 |
Q |
| |
|
||| |
|
|
| T |
5432530 |
att |
5432528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 331 - 499
Target Start/End: Original strand, 5182619 - 5182787
Alignment:
| Q |
331 |
ttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagatttt |
430 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| |||||||||| || ||||| ||| || | ||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
5182619 |
ttgctgtttactaactcaatggaaactaaattttcttgataaaaactcgaaggaatgcatttcaaaggaaatccattccaagaaagccatatcagatttc |
5182718 |
T |
|
| Q |
431 |
ttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatct |
499 |
Q |
| |
|
||||||| | ||||| | ||| ||||||| ||| | ||||||||||| || ||| ||||||| ||||| |
|
|
| T |
5182719 |
ttgaaagatattcaaagtccccctcaagttgtacactagcaagttgaagcagtctaagttttttcatct |
5182787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 300 - 542
Target Start/End: Complemental strand, 5349589 - 5349347
Alignment:
| Q |
300 |
tacctgtgcctttttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaagga |
399 |
Q |
| |
|
|||||| |||| |||||||| || |||||| ||| || |||||||| | ||||||||||||| || ||||||| ||| ||| || || |||| | |
|
|
| T |
5349589 |
tacctgggcctctttccataaaagtttgacacggctattctctaactcgatggaaactaaattttctctataaaagtttgcaggtatatgtggtaaacaa |
5349490 |
T |
|
| Q |
400 |
aatccatcccaagaaaaccatctcagattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatct |
499 |
Q |
| |
|
|||| | |||||||| ||||||||||||||||||||| | ||||||| |||||||||| ||| ||||||||||||| |||||| ||| | | ||||| |
|
|
| T |
5349489 |
catccgttccaagaaagccatctcagattttttgaaagatattcaaaatctccatcaagttttaccccagcaagttgaagcaatctgagtctcttcatct |
5349390 |
T |
|
| Q |
500 |
tctcaaatgcttcagtattaaaacattgtacattagctcttgg |
542 |
Q |
| |
|
||| ||||||| |||| ||||||||| | ||||||||||||| |
|
|
| T |
5349389 |
tcttgaatgctttagtactaaaacatttttcattagctcttgg |
5349347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 300 - 526
Target Start/End: Original strand, 5355339 - 5355565
Alignment:
| Q |
300 |
tacctgtgcctttttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaagga |
399 |
Q |
| |
|
|||||| |||| |||||| | || |||||| ||||| || |||||||| | |||||||||||||||| || ||| | ||| || || |||||||||| |
|
|
| T |
5355339 |
tacctgggcctctttccacataagtttgacattgctattctctaactctatggaaactaaatttcctagaaaaaggtttgttggtatatgtgttaaagga |
5355438 |
T |
|
| Q |
400 |
aatccatcccaagaaaaccatctcagattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatct |
499 |
Q |
| |
|
||| ||| |||||| | ||| ||||||||| ||||||| |||||||| |||||||||| ||||||||||||| ||| |||| ||||| | | ||||| |
|
|
| T |
5355439 |
aattcattccaagacagccacctcagatttcttgaaagacattcaaaatttccatcaagttttactccagcaagtagaagcaatttcagtctcttcatct |
5355538 |
T |
|
| Q |
500 |
tctcaaatgcttcagtattaaaacatt |
526 |
Q |
| |
|
||| |||||||| |||| ||||||||| |
|
|
| T |
5355539 |
tcttaaatgctttagtactaaaacatt |
5355565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 334 - 526
Target Start/End: Complemental strand, 5382924 - 5382732
Alignment:
| Q |
334 |
ctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagattttttg |
433 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||| ||||| ||||||| ||| ||| |||||||||||| | |||| | | ||||| || ||| || |
|
|
| T |
5382924 |
ctgttttctaactctatggaaactaaatttctttgacaaaagtttgaaggtatgaatgataaaggaaatcctttccaacacagtcatcttagttttcctg |
5382825 |
T |
|
| Q |
434 |
aaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaacatt |
526 |
Q |
| |
|
|||| | | |||| |||||||||| ||||||||||||||||| |||||| ||| |||||||||||| ||||| || ||| |||||||||| |
|
|
| T |
5382824 |
aaagatacttgaaatctccatcaagttgtactccagcaagttgaagcaatcttagtctttccatcttcttaaatgttttagtgttaaaacatt |
5382732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 511
Target Start/End: Complemental strand, 5342965 - 5342766
Alignment:
| Q |
312 |
tttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaa |
411 |
Q |
| |
|
|||||| |||| |||||| |||||||||| ||||| | |||||||||||||||||||| |||| || ||| ||| || ||||||||||||||| |||| |
|
|
| T |
5342965 |
tttccacagaagtttgacactgctgttttcaaactccatggaaactaaatttccttgatcaaagtttttaggtatgcatcttaaaggaaatccattccaa |
5342866 |
T |
|
| Q |
412 |
gaaaaccatctcagattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgctt |
511 |
Q |
| |
|
| | |||||| || ||| | ||||| | ||||||| |||||||||| ||| |||| |||||||| |||||| ||||| | |||||| |||||||||| |
|
|
| T |
5342865 |
catagccatcttagttttctagaaagatagtcaaaatctccatcaagttgtacgccagaaagttgaagcaatcttagtttattcatcttttcaaatgctt |
5342766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 542
Target Start/End: Complemental strand, 5095381 - 5095139
Alignment:
| Q |
300 |
tacctgtgcctttttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaagga |
399 |
Q |
| |
|
|||||| |||| |||||||| || |||||| ||||| || |||||||| | |||||| || |||||| |||||| ||| ||| || |||||||| | |
|
|
| T |
5095381 |
tacctgggcctctttccataaaagtttgacattgctattctctaactcgatggaaaccaagcttcctttgtaaaagtttgtaggtatatgtgttaaagaa |
5095282 |
T |
|
| Q |
400 |
aatccatcccaagaaaaccatctcagattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatct |
499 |
Q |
| |
|
||||||| |||||| | ||||||||||||| | ||||| | ||||||| |||||||||| || ||||||||||||| |||||| ||| | ||||| |
|
|
| T |
5095281 |
aatccattccaagacagccatctcagatttctcgaaagatattcaaaatctccatcaagtttaaccccagcaagttgaagcaatctgagtctcgtcatct |
5095182 |
T |
|
| Q |
500 |
tctcaaatgcttcagtattaaaacattgtacattagctcttgg |
542 |
Q |
| |
|
||| ||||||| |||| ||||||||| | |||| |||||||| |
|
|
| T |
5095181 |
tcttgaatgctttagtactaaaacatttttcattggctcttgg |
5095139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 542
Target Start/End: Complemental strand, 5369598 - 5369455
Alignment:
| Q |
399 |
aaatccatcccaagaaaaccatctcagattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatc |
498 |
Q |
| |
|
|||||||| |||||| | ||||||||||||| | ||||| | ||||||| |||||||||| ||| ||||||||||| | |||||| ||||| | |||| |
|
|
| T |
5369598 |
aaatccattccaagacagccatctcagatttctggaaagatattcaaaatctccatcaagttttaccccagcaagttggagcaatctgagtttgttcatc |
5369499 |
T |
|
| Q |
499 |
ttctcaaatgcttcagtattaaaacattgtacattagctcttgg |
542 |
Q |
| |
|
|||| ||||||| ||| |||||| || | ||||||||||||| |
|
|
| T |
5369498 |
ttcttgaatgctttagtgctaaaacgtttttcattagctcttgg |
5369455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 542
Target Start/End: Original strand, 5067875 - 5068105
Alignment:
| Q |
312 |
tttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaa |
411 |
Q |
| |
|
|||||||| || |||||| ||||| || |||||||| | ||||||||||||| || ||||||| || ||| || || |||| | |||||| |||| |
|
|
| T |
5067875 |
tttccataaaagtttgacattgctattctctaactcgatggaaactaaattttctctataaaagttttcaggtatatgtggtaaacaacatccattccaa |
5067974 |
T |
|
| Q |
412 |
gaaaaccatctcagattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgctt |
511 |
Q |
| |
|
|| | |||| |||||||| | ||||| | ||||||| |||||||| | ||| ||||||||||||| |||||| ||| | | |||||||| ||||||| |
|
|
| T |
5067975 |
gacagccatatcagatttctcgaaagatattcaaaatctccatcaaggtttaccccagcaagttgaagcaatctgagtctcttcatcttcttgaatgctt |
5068074 |
T |
|
| Q |
512 |
cagtattaaaacattgtacattagctcttgg |
542 |
Q |
| |
|
|||| ||||||||| | |||||| |||||| |
|
|
| T |
5068075 |
tagtactaaaacatttttcattagatcttgg |
5068105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 485
Target Start/End: Original strand, 5132621 - 5132782
Alignment:
| Q |
324 |
tttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctc |
423 |
Q |
| |
|
|||||| ||||| ||||||||||| | |||||||||| || || |||||| || ||| || ||||||||||||||||| |||| | |||||||| |
|
|
| T |
5132621 |
tttgacattgctattttctaactcgatggaaactaaactttctctataaaaatctgtaggtatatgtgttaaaggaaatccattccaacacaaccatctt |
5132720 |
T |
|
| Q |
424 |
agattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatct |
485 |
Q |
| |
|
|||||| ||||||| | ||||||| |||||||||| ||| ||| ||||||||| |||||| |
|
|
| T |
5132721 |
agatttcttgaaaggatttcaaaatctccatcaagttttaccccatcaagttgaagcaatct |
5132782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 5260959 - 5261054
Alignment:
| Q |
442 |
tcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaacattgtacattagct |
537 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||||| |||||| || | | |||||| |||||||||| |||| ||||||||| | |||||||| |
|
|
| T |
5260959 |
tcaaaatccccatcaagttttacttcagcaagttgaagcaatctgagactcttcatcttttcaaatgctttagtactaaaacattttgcattagct |
5261054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 542
Target Start/End: Complemental strand, 5424925 - 5424723
Alignment:
| Q |
340 |
tctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagattttttgaaagtt |
439 |
Q |
| |
|
|||||||| | ||||||||||| | || ||||||| ||| ||| || || ||||| | |||||| |||||| | ||||||||||||| | ||||| | |
|
|
| T |
5424925 |
tctaactcgatggaaactaaatgttctctataaaagtttgtaggtatatgtggtaaagaacatccattccaagacagccatctcagatttctcgaaagat |
5424826 |
T |
|
| Q |
440 |
tatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaacattgtacattagctct |
539 |
Q |
| |
|
| ||||| |||| ||||| ||| ||||||||||||| |||||| ||| | |||||||| ||||||| |||| ||||||||| | |||||||||| |
|
|
| T |
5424825 |
atttaaaatctccattaagttttaccccagcaagttgaagcaatctgagtctcgtcatcttcttgaatgctttagtactaaaacatttttcattagctct |
5424726 |
T |
|
| Q |
540 |
tgg |
542 |
Q |
| |
|
||| |
|
|
| T |
5424725 |
tgg |
5424723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 5284957 - 5285052
Alignment:
| Q |
442 |
tcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaacattgtacattagct |
537 |
Q |
| |
|
||||||| ||||||||||| |||| | |||||||||| |||||| || | | |||||| |||||||||| |||| ||||||||| | |||||||| |
|
|
| T |
5284957 |
tcaaaatccccatcaagttttacttctgcaagttgaagcaatctgagactcttcatcttttcaaatgctttagtactaaaacattttgcattagct |
5285052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 535
Target Start/End: Complemental strand, 5446276 - 5446183
Alignment:
| Q |
442 |
tcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaacattgtacattag |
535 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||| ||||| ||| | | |||||| |||||||||| |||| ||||||||| | |||||| |
|
|
| T |
5446276 |
tcaaaatctccatcaagttttacctcagcaagttgaagaaatctgagtctcttcatcttttcaaatgctttagtactaaaacattttgcattag |
5446183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 324 - 521
Target Start/End: Original strand, 36214563 - 36214760
Alignment:
| Q |
324 |
tttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctc |
423 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||| |||||||| ||||||| |
|
|
| T |
36214563 |
tttgacattgctgttttctaactcaatggaaactaaattttcttgataaaagcttgaaggaatgcatgttaaaggaaaaccattccaagaaagccatctc |
36214662 |
T |
|
| Q |
424 |
agattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaa |
521 |
Q |
| |
|
| |||||||||||| | ||||| | ||||||||||| ||| ||||||||||||| |||||| ||| ||| |||||||| |||||||| |||| |||| |
|
|
| T |
36214663 |
aaattttttgaaagatactcaaagtccccatcaagttgtacaccagcaagttgaagcaatctgagtcttttcatcttcttaaatgctttagtactaaa |
36214760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 334 - 526
Target Start/End: Original strand, 9385 - 9577
Alignment:
| Q |
334 |
ctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagattttttg |
433 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||| ||||||| ||| ||| |||||||||||| | |||| | | |||||| || ||| ||| |
|
|
| T |
9385 |
ctgttttctaactcaatggaaactaaatttctttgataaaagtttgaaggtatgaatggtaaaggaaatcctttccaacacagccatcttagttttcttg |
9484 |
T |
|
| Q |
434 |
aaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaacatt |
526 |
Q |
| |
|
|||| | || |||| |||||||||| ||||||||||||||||| |||||| ||| | |||||||||||||||| ||||| | ||||||||| |
|
|
| T |
9485 |
aaagatactcgaaatctccatcaagttgtactccagcaagttgaagcaatcttagtctctccatcttctcaaatgattcagcactaaaacatt |
9577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 312 - 523
Target Start/End: Complemental strand, 8877191 - 8876980
Alignment:
| Q |
312 |
tttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaa |
411 |
Q |
| |
|
|||||| |||| |||||| ||||| ||||||||||| | || || |||||| ||||||||||| | ||| ||| | |||||||||||| ||| |||| |
|
|
| T |
8877191 |
tttccacagaactttgacattgctattttctaactcgatagataccaaattttcttgataaaagtcggtaggtatgcaggttaaaggaaatgcattccaa |
8877092 |
T |
|
| Q |
412 |
gaaaaccatctcagattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgctt |
511 |
Q |
| |
|
|| ||| ||||||||||||| ||||| ||||| || |||||||||| ||| || |||||||||| |||||| ||| | | |||||||| |||||||| |
|
|
| T |
8877091 |
gataacaatctcagatttttggaaagaaattcaaagtttccatcaagttgtacgccggcaagttgaagcaatctgagtctcttcatcttcttaaatgctt |
8876992 |
T |
|
| Q |
512 |
cagtattaaaac |
523 |
Q |
| |
|
|||| |||||| |
|
|
| T |
8876991 |
tagtactaaaac |
8876980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 324 - 512
Target Start/End: Original strand, 4125127 - 4125315
Alignment:
| Q |
324 |
tttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctc |
423 |
Q |
| |
|
|||||| ||||| ||||||||||||| |||||| | ||||| |||||| ||| ||||||| ||| |||||||||||||||||| ||| | ||||||| |
|
|
| T |
4125127 |
tttgacattgctattttctaactcaatggaaacaatatttctttgatagaagtttgaaggtatgcatgttaaaggaaatccattccagtgtagccatctc |
4125226 |
T |
|
| Q |
424 |
agattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttc |
512 |
Q |
| |
|
| | ||||||||| | | ||||| |||||||||| | | |||| |||||||| |||||| ||||| | |||||||| ||||||||| |
|
|
| T |
4125227 |
aattgttttgaaagatatttaaaatctccatcaagttgtgcaccagaaagttgaagcaatctgagtttcttcatcttcttaaatgcttc |
4125315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 332 - 528
Target Start/End: Complemental strand, 4344311 - 4344115
Alignment:
| Q |
332 |
tgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagattttt |
431 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||| ||| ||||||| ||| ||| ||| |||||||||| ||| | |||||||| |||| | |
|
|
| T |
4344311 |
tgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgctaacggaaatccattccagtgtagccatctcaaatttct |
4344212 |
T |
|
| Q |
432 |
tgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaacattgt |
528 |
Q |
| |
|
|||||| | | ||||| |||||||||| ||| |||| |||||| | |||||| ||||| | ||| ||||||||||||| ||| |||||| |||| |
|
|
| T |
4344211 |
tgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctaagtttcttcatgttctcaaatgctttggtactaaaacgttgt |
4344115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 324 - 528
Target Start/End: Complemental strand, 4352598 - 4352394
Alignment:
| Q |
324 |
tttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctc |
423 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||||||||| |||||| ||| |||||| || |||||||||||||||||| ||| | |||| || |
|
|
| T |
4352598 |
tttgacattgctgttttctaacacaacggaaactaaatttctttgatagaagtttgaagctatacatgttaaaggaaatccattccagtgcagccatttc |
4352499 |
T |
|
| Q |
424 |
agattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaac |
523 |
Q |
| |
|
| |||| ||||||| | | ||||| |||||||||| ||| |||| |||||| | |||||| ||||| | ||| ||||||||||||| ||| |||||| |
|
|
| T |
4352498 |
aaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggtactaaaac |
4352399 |
T |
|
| Q |
524 |
attgt |
528 |
Q |
| |
|
|||| |
|
|
| T |
4352398 |
gttgt |
4352394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 335 - 537
Target Start/End: Original strand, 4134524 - 4134726
Alignment:
| Q |
335 |
tgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagattttttga |
434 |
Q |
| |
|
||||||||| || || |||||||||||||| ||| |||||| ||| || || |||||||||||||| ||| |||| | | |||||||| |||| |||| |
|
|
| T |
4134524 |
tgttttctagctgaatggaaactaaatttctttggtaaaagtttgtgggcatcaatgttaaaggaaattcattccaacacagccatctcaaatttcttga |
4134623 |
T |
|
| Q |
435 |
aagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaacattgtacatta |
534 |
Q |
| |
|
||| | | ||||| |||||||||| ||| |||| | |||||| |||||||||||| | ||| ||||||||||| | ||| ||||||||| | ||||| |
|
|
| T |
4134624 |
aagatatttaaaatctccatcaagttgtacaccagaaggttgaagcaatctcagtttcttcatgttctcaaatgcattggtactaaaacattttgcatta |
4134723 |
T |
|
| Q |
535 |
gct |
537 |
Q |
| |
|
||| |
|
|
| T |
4134724 |
gct |
4134726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 315 - 528
Target Start/End: Complemental strand, 4334870 - 4334657
Alignment:
| Q |
315 |
ccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaa |
414 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||| |||||||| ||||| |||| || ||||||| ||| |||||||||||||||||| ||| |
|
|
| T |
4334870 |
ccatacaagtttgacattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgc |
4334771 |
T |
|
| Q |
415 |
aaccatctcagattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcag |
514 |
Q |
| |
|
| |||||||| ||| | ||||| | | ||||| |||||||||| | | |||| |||||||| |||||| ||||| | |||||||| |||||||| | |
|
|
| T |
4334770 |
agccatctcaactttctggaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttgg |
4334671 |
T |
|
| Q |
515 |
tattaaaacattgt |
528 |
Q |
| |
|
|| |||||| |||| |
|
|
| T |
4334670 |
tactaaaacgttgt |
4334657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 331 - 508
Target Start/End: Complemental strand, 4359768 - 4359591
Alignment:
| Q |
331 |
ttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagatttt |
430 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||||| ||| |||| || ||| |||||||||||||||||| ||| | |||||||| ||| |
|
|
| T |
4359768 |
ttgctgttttctaacacaatggaaactaaatttctttgatagaagtttgacggtatgcatgttaaaggaaatccattccactgcagccatctcaattttc |
4359669 |
T |
|
| Q |
431 |
ttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatg |
508 |
Q |
| |
|
||||||| | | ||||| |||||||||| ||| || | |||||| | |||||| ||||| | ||| |||||||||| |
|
|
| T |
4359668 |
ttgaaagatgtttaaaatctccatcaagttgtacaccggaaagttgcagcaatctgagtttcttcatgttctcaaatg |
4359591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 331 - 406
Target Start/End: Original strand, 4321728 - 4321803
Alignment:
| Q |
331 |
ttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccat |
406 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||||| ||| ||||||| ||| || ||||||||||||||| |
|
|
| T |
4321728 |
ttgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatcttaaaggaaatccat |
4321803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 522
Target Start/End: Original strand, 22585211 - 22585283
Alignment:
| Q |
450 |
cccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgcttcagtattaaaa |
522 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||||| ||| || |||||| ||||||| |||||| ||||| |
|
|
| T |
22585211 |
cccatcaagttttacttcagcaagttgaagcaatctgagtcctttcatcttttcaaatgagtcagtactaaaa |
22585283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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