View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-15 (Length: 529)
Name: NF1614-Insertion-15
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-15 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 24 - 529
Target Start/End: Original strand, 36246174 - 36246679
Alignment:
| Q |
24 |
tcaacattattaaactaaaatgtttggttatttttgtttgagttgcaggattacaaagatgtggaaagagttgtcgtctacgttggacaaactatctcca |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36246174 |
tcaacattattaaactaaaatgtttggttatttttgtttgagttgcaggattacaaagatgtggaaagagttgtcgtctacgttggacaaactatctccg |
36246273 |
T |
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| Q |
124 |
accggatataaagagaggacgattctcttttgaagaagaagaaaccataattcagctgcatagcatacttggcaacaagtaataataattaagtctctca |
223 |
Q |
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| T |
36246274 |
accggatataaagagaggacgattctcttttgaagaagaagaaaccataattcagctgcatagcatacttggcaacaagtaataataattaagtctctca |
36246373 |
T |
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| Q |
224 |
gtatataaattttaatcaatttatctacatgtgtaacagtgagttaaatacatattaattttcattatgattaagatactatatacgacagaataataga |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36246374 |
gtatataaattttaatcaatttatctacatgtgtaacaatgagttaaatacatattaattttcattatgattaagacactatatacgacagaataataga |
36246473 |
T |
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| Q |
324 |
tatgatttttgtgactaaactacatagttttgaattgtgtaggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattat |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36246474 |
tatgatttttgtgactaaactacatagttttgaattgtgtaggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattat |
36246573 |
T |
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| Q |
424 |
tggtacactcacattaggaaaagactcttaagaatgggaattgatcctgtaacacataatccacgttttgatcttttggacctatcttctatcctaaatt |
523 |
Q |
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| T |
36246574 |
tggaacactcacattaggaaaagactcttaagaatgggaattgatcctgtgacacataatccacgttttgatcttttggacctatcttctatcctaaatt |
36246673 |
T |
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| Q |
524 |
catctc |
529 |
Q |
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|||||| |
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| T |
36246674 |
catctc |
36246679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 431
Target Start/End: Complemental strand, 52071562 - 52071519
Alignment:
| Q |
388 |
ctaccaggaagaacagacaatgaaatcaagaattattggtacac |
431 |
Q |
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| T |
52071562 |
ctaccagggcgaacagacaatgaaatcaagaattattggaacac |
52071519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 27808566 - 27808611
Alignment:
| Q |
389 |
taccaggaagaacagacaatgaaatcaagaattattggtacactca |
434 |
Q |
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| T |
27808566 |
taccaggaagaacagataatgagataaagaattattggaacactca |
27808611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 31941926 - 31941995
Alignment:
| Q |
395 |
gaagaacagacaatgaaatcaagaattattggtacactcacattaggaaaagactcttaagaatgggaat |
464 |
Q |
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| T |
31941926 |
gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat |
31941995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 464
Target Start/End: Original strand, 32000885 - 32000954
Alignment:
| Q |
395 |
gaagaacagacaatgaaatcaagaattattggtacactcacattaggaaaagactcttaagaatgggaat |
464 |
Q |
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| T |
32000885 |
gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat |
32000954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 2892568 - 2892440
Alignment:
| Q |
77 |
caaagatgtggaaagagttgtcgtctacgttggacaaactatctccaaccggatataaagagaggacgattctcttttgaagaagaagaaaccataattc |
176 |
Q |
| |
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||||||||||| || ||||||||||| ||||||||||||||||||| ||| |||||||| | || || || || |||||||| ||||| || || |||| |
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| T |
2892568 |
caaagatgtggcaaaagttgtcgtctccgttggacaaactatctccgaccagatataaaacgtggtcggttttcatttgaagaggaagagacaattattc |
2892469 |
T |
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| Q |
177 |
agctgcatagcatacttggcaacaagtaa |
205 |
Q |
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|||| |||||||| ||||||||||||||| |
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| T |
2892468 |
agctacatagcattcttggcaacaagtaa |
2892440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 363 - 481
Target Start/End: Complemental strand, 2892344 - 2892226
Alignment:
| Q |
363 |
taggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattattggtacactcacattaggaaaagactcttaagaatggga |
462 |
Q |
| |
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|||||||||| ||||||| ||| | |||||||||| || ||||||||||| || || |||||| |||| |||||||||||||| || || ||||||||| |
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| T |
2892344 |
taggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatggga |
2892245 |
T |
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| Q |
463 |
attgatcctgtaacacata |
481 |
Q |
| |
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|||||||| |||||||||| |
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| T |
2892244 |
attgatccagtaacacata |
2892226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 489
Target Start/End: Complemental strand, 37881393 - 37881267
Alignment:
| Q |
363 |
taggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattattggtacactcacattaggaaaagactcttaagaatggga |
462 |
Q |
| |
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| T |
37881393 |
taggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagactacttcgaagtgga |
37881294 |
T |
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| Q |
463 |
attgatcctgtaacacataatccacgt |
489 |
Q |
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||||||||||| || |||| ||||||| |
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| T |
37881293 |
attgatcctgttactcatactccacgt |
37881267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 37881920 - 37881832
Alignment:
| Q |
77 |
caaagatgtggaaagagttgtcgtctacgttggacaaactatctccaaccggatataaagagaggacgattctcttttgaagaagaaga |
165 |
Q |
| |
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||||| ||||| |||||||||||||| || |||||||||||| | ||| ||||| ||||||||| | ||||| |||||||||||||| |
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| T |
37881920 |
caaaggtgtggtaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaagagaggaaggttctcctttgaagaagaaga |
37881832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 27632624 - 27632582
Alignment:
| Q |
384 |
taggctaccaggaagaacagacaatgaaatcaagaattattgg |
426 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
27632624 |
taggcttccaggaagaacagacaatgaaatcaagaactattgg |
27632582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 422
Target Start/End: Complemental strand, 17118285 - 17118252
Alignment:
| Q |
389 |
taccaggaagaacagacaatgaaatcaagaatta |
422 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |
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| T |
17118285 |
taccaggaagaacagacaatgaaataaagaatta |
17118252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 44674752 - 44674800
Alignment:
| Q |
389 |
taccaggaagaacagacaatgaaatcaagaattattggtacactcacat |
437 |
Q |
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|||||||||||||||| ||||| ||||||||||| ||| |||||||||| |
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| T |
44674752 |
taccaggaagaacagataatgagatcaagaattactggaacactcacat |
44674800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 437
Target Start/End: Original strand, 39916909 - 39916952
Alignment:
| Q |
394 |
ggaagaacagacaatgaaatcaagaattattggtacactcacat |
437 |
Q |
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||||||||||||||||| |||||||| |||||| |||||||||| |
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| T |
39916909 |
ggaagaacagacaatgagatcaagaactattggaacactcacat |
39916952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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