View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-16 (Length: 515)
Name: NF1614-Insertion-16
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-16 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 8 - 514
Target Start/End: Complemental strand, 50468459 - 50467954
Alignment:
| Q |
8 |
tctaagcagtctgattttaatttataacgtgcgaacttagtaaattaaaaggaaaaaagtgaataaaaagcatttagtgagtaggtgtaatttgccacaa |
107 |
Q |
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| T |
50468459 |
tctaagcaatctgactttaatttctaacgtgcgaacttagtaaattaaaaggaaaaaagtgaataaaaagcatttagtgagtaggtgtaatttgccacaa |
50468360 |
T |
|
| Q |
108 |
aattttgatggtnnnnnnnntcttaataattcccttnnnnnnnn--tcttaataattaacaatgataatatattgaagcaacttatacacatttggtctc |
205 |
Q |
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| T |
50468359 |
aattttgatggtaaaaa---tcttaataattcccttaaaaaaaaaatcttaataattaacaatgataatatattgaagcagcttatacacatttggtctc |
50468263 |
T |
|
| Q |
206 |
cgtaaaataatatnnnnnnnnncttatactcgttaggaagttaattaaacaattctgaaacagagaggttggggaataaccatagttgaaaattgaaatt |
305 |
Q |
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| T |
50468262 |
cgtaaaataatataaaaaaaaccttatactcgttaggaagttaattaaacaattctgaaacagagaggttggggaataaccatagttgaaaattgaaatt |
50468163 |
T |
|
| Q |
306 |
ggcatgtgcatccatgcatggagcatgaccaatagccaataagtgtagttggagacataacagttcacttccaactatatttttctcttagaacccaaga |
405 |
Q |
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| T |
50468162 |
ggcatgtgcatccatgcatggagcatgaccaatagccaataagtgtagttggagacataacagttcacttccaactatatttttctcttagaacccaaga |
50468063 |
T |
|
| Q |
406 |
ttcggaagacataatgatacaaagattccacacaaggttatcacttctacggttctactactaatttaaaaagagatttcaaacacattggagaaattaa |
505 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50468062 |
ttcggaagacataatgatacaaagattccacacaaggatatcacttctacggttctactactaatttaaaaagagatttcaaacacattggagaaattaa |
50467963 |
T |
|
| Q |
506 |
attattcat |
514 |
Q |
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| T |
50467962 |
attattcat |
50467954 |
T |
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