View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-17 (Length: 503)
Name: NF1614-Insertion-17
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-17 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 151 - 503
Target Start/End: Complemental strand, 8780683 - 8780334
Alignment:
| Q |
151 |
attttgatcttcggtgatgcattttttgaaattatgctgagttattttcctctacttgataattgaaaatgatcttgaatgccatatgagtgccataact |
250 |
Q |
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| T |
8780683 |
attttgatattctatgatgtattttttaaaattatgctgagttattttcctctacttggtcattgaaaatggtcttgaatgccat--gagtcccctaagt |
8780586 |
T |
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| Q |
251 |
gatggcttggtcaacataccttgattcttcgaaagattcttgtccatttttcaccattgctttatacacctctctttttacctaattattcaacaggtgt |
350 |
Q |
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| T |
8780585 |
gatggcttggtcaacaaagcttgactcttcggaagattcttgttcattttgcagcattgctttataaacctctcatttcacctgattattcaacaagtct |
8780486 |
T |
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| Q |
351 |
tgattagaagcaaataatcaactggtttattaatcatcaaaggaaacggcactggaagctttcagaggacatgcagtttgtggtgatggatccaagtcat |
450 |
Q |
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| T |
8780485 |
taatcagaagcaaataaacaactggtttattaaa-atcaaagaaaacggcactggaagccttcagaggacatgcagtttgtggtgatggatccaagtcat |
8780387 |
T |
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| Q |
451 |
ccacactattacatggataatgttctcaccaattcatatctcatggatctatc |
503 |
Q |
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| T |
8780386 |
ccacactattacatggataatgttctcaccaattcatatcccatggatctatc |
8780334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 340 - 503
Target Start/End: Complemental strand, 8791989 - 8791829
Alignment:
| Q |
340 |
tcaacaggtgttgattagaagcaaataatcaactggtttattaatcatcaaaggaaacggcactggaagctttcagaggacatgcagtttgtggtgatgg |
439 |
Q |
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| T |
8791989 |
tcaacaggtcttgatcagaagcaaataaacaactggtttattaatca---aaggaaacggcactggaagccttcagaggacatgcagtttgtggtgatgg |
8791893 |
T |
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| Q |
440 |
atccaagtcatccacactattacatggataatgttctcaccaattcatatctcatggatctatc |
503 |
Q |
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| T |
8791892 |
atccaagtcatccacactattacatggataatgttctcaccaattcatatcccatggatctatc |
8791829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 8780885 - 8780783
Alignment:
| Q |
12 |
tagccaagacattgcaaatgcatgcaaatatatcagtagacaatgagtaaatagcaatcacacaaggattgatcaagacccaaaagaaaaaccacaaaat |
111 |
Q |
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| T |
8780885 |
tagccaagacattacaaatgcatgcaaatatatcattagacaccaagta----gcaataacacaaggattgatcaagacccaaatgaaaaaccacaaaat |
8780790 |
T |
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| Q |
112 |
atgaatt |
118 |
Q |
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| T |
8780789 |
ataaatt |
8780783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 256 - 343
Target Start/End: Original strand, 34771225 - 34771312
Alignment:
| Q |
256 |
cttggtcaacataccttgattcttcgaaagattcttgtccatttttcaccattgctttatacacctctctttttacctaattattcaa |
343 |
Q |
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| T |
34771225 |
cttggtcaacaagtcttgattctttgaaagattatagtccattttacatcattgctttatatacctctcattttacataattattcaa |
34771312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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