View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-19 (Length: 468)
Name: NF1614-Insertion-19
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 42088554 - 42089014
Alignment:
| Q |
8 |
aagagtttcttcctccatatcttaattcatgctccatgcttccccttctcaccatttaccatctccttctcttcctccatcaccatggccctcaaaattt |
107 |
Q |
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| T |
42088554 |
aagagtttcttcctccatatcttaattcatgctccatgcttccccttctcaccatttaccatctccttctcttcctccatcaccatggccctcaaaattt |
42088653 |
T |
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| Q |
108 |
atcaagtagttcacattctactatggctatctctcctatttttgctctttcatcaatattacaatctcaagtactcaaagatctacaagaaacaaatcat |
207 |
Q |
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| T |
42088654 |
atcaagtagttcacattctactatggctatctctcctatttttgctctttcatcaatattacaatctcaagtactcaaagatctacaagaaacaaatcat |
42088753 |
T |
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| Q |
208 |
acaagcaagtcatcattcatcaccctctcatcacagcagaaaagttctagcaagaaaatttcacttctctcctttctttaagcatcatcatcctcaaggt |
307 |
Q |
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| T |
42088754 |
acaagcaagtcatcattcatcaccctctcatcacagcagaaaagttctagcaagaaaatttcacttctctcctttctttaagcatcttcatcctcaaggt |
42088853 |
T |
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| Q |
308 |
tttgcagtgcagaaggatccttcagacacagcgatcgacccacgttatggggttgagaagcgccgtgtgcctactggtccaaacccgttacaccattgat |
407 |
Q |
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| T |
42088854 |
tttgcagtgcagaaggatccttcagacacagcgatcgatccacgttatggggttgagaagcgccgtgtgcctactggtccaaacccgttacaccattgat |
42088953 |
T |
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| Q |
408 |
tgaattctcgatttattttgtctaaaccctctggttctcagggaaatgaggtcctgcttgg |
468 |
Q |
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| T |
42088954 |
tgaattctcgatttattttgtcttaaccctctggttctcaggaaaatgaggtcatgcttgg |
42089014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 42083998 - 42084068
Alignment:
| Q |
109 |
tcaagtagttcacattctactatggctatctctcctatttttgctctttcatcaatattacaatctcaagt |
179 |
Q |
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||||||| |||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
42083998 |
tcaagtaattcacattcttctatggctatctttcctatttttgctctttcatgggcattacaatctcaagt |
42084068 |
T |
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