View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614-Insertion-2 (Length: 1004)

Name: NF1614-Insertion-2
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614-Insertion-2
NF1614-Insertion-2
[»] chr6 (3 HSPs)
chr6 (7-985)||(17932665-17933654)
chr6 (813-888)||(31209023-31209098)
chr6 (665-727)||(24662477-24662539)
[»] chr3 (6 HSPs)
chr3 (7-539)||(32844733-32845259)
chr3 (534-996)||(32844137-32844605)
chr3 (7-162)||(32831824-32831978)
chr3 (724-888)||(23876867-23877029)
chr3 (726-888)||(25535136-25535298)
chr3 (390-450)||(32831548-32831608)
[»] chr1 (2 HSPs)
chr1 (739-888)||(42559799-42559948)
chr1 (734-862)||(35008917-35009045)
[»] chr7 (3 HSPs)
chr7 (724-888)||(366771-366935)
chr7 (724-888)||(7401966-7402130)
chr7 (806-862)||(13034828-13034884)
[»] chr5 (1 HSPs)
chr5 (724-888)||(27075893-27076057)
[»] chr2 (3 HSPs)
chr2 (724-888)||(26584704-26584868)
chr2 (806-899)||(361600-361693)
chr2 (818-888)||(4046438-4046508)
[»] chr8 (1 HSPs)
chr8 (735-886)||(11788405-11788556)
[»] chr4 (2 HSPs)
chr4 (844-900)||(10542730-10542786)
chr4 (825-888)||(4613697-4613760)


Alignment Details
Target: chr6 (Bit Score: 682; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 7 - 985
Target Start/End: Original strand, 17932665 - 17933654
Alignment:
Q  7 accatggtctgattgcatccatcaatacccaatatcaactttcaattaataattttacacttgttattatatattgttcttggtgttcttattattgnnn 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||       
T  17932665 accatggtctgattgcatccatcaatacccaatatcaactttcaattaataattttacacttgttattatatattgttcttggtgttctttttaatgttt 17932764  T
Q  107 nnnnnagaagtattaatgctgttcttgtgtttaaggttgtgcaagaaaagtactattgnnnnnnnggggtttctatattttattattgtaaaagcatgtt 206  Q
         ||||||||||||| |||||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||||||||    
T  17932765 tttttagaagtattaatgatgttcttgtgtttaaggttgtgcaagaaaaatactattgaaaaaaaggggtttctatattttattattgtaaaagcatgtt 17932864  T
Q  207 gatggatccagcccaagatatcaataggtagtgttagtgtatcatactcagccgttatatatggcgccagatgtannnnnnnnnnnn-------accgtt 299  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||| || |                    ||||||    
T  17932865 gatggatccagcccaagatatcaataggaagtgttagtgtatcatactcagcctatatatatggcgccaaatttttttttttttttttttttttaccgtt 17932964  T
Q  300 gttgctggttttgtgcgtcttacacagaccaaaccttaataatactttgttgttnnnnnnnnnngaggaagtgtatcatagccagctctatcaaattcat 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||    
T  17932965 gttgctggttttgtgcgtcttacacagaccaaaccttaataatactttgttgttaaaaaaaaaa-aggaagtgtatcatagccagctctatcaaattcat 17933063  T
Q  400 gattatttggatgcttagtcatatgagagtgtgcaatatctacttcattgtatcattgtgaaaaggatcaatgtgaggtagatcaaattaactttgaagt 499  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17933064 gattatttggatgcttagtcatatgaaagtgtgcaatatctacttcattgtatcattgtgaaaaggatcaatgtgaggtagatcaaattaactttgaagt 17933163  T
Q  500 actataagaataaggaggaatggagttacaccacttgtgagtaggacatgcaaatttattcatatagttaattctcttgagttgttgaataaaagttaca 599  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||    
T  17933164 attataagaataaggaggaatggagttacaccacttgtgaataggacatgcaaatttattcatatagttaattctctttagttgttgaataaaaatttca 17933263  T
Q  600 cacaattcttcaagagtaacaaaggctaacaaaggtatgaatcacaaagtgtcaaacc--nnnnnnntaggagtgaaacatcaacttcgtccttgagttt 697  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||         |||||||||||||||| |||||| |||||||||    
T  17933264 cacaattcttcaagagtaacaaaggctaacaaaggcatgaatcacaaagtgtcaaaccaaaaaaaaataggagtgaaacatcaccttcgttcttgagttt 17933363  T
Q  698 gtaaggattaatcaaattcgtcccccaattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatg 797  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  17933364 gcaaggattaatcaaattcgtcctccaattagtccctgaatttaacacatgtccgtcaaattcatccctctgtccaatctctctgttagtgatgctaatg 17933463  T
Q  798 tgtcaatgtgcatgatgtgttgtgatgtccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttcactttcaatt 897  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17933464 tgtcaatgtgcatgatgtgttgtgatgtccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttcactttcaatt 17933563  T
Q  898 tttgttgtttttcctc-tttacccctcctttacccatccttcgatcctcgcatttta-tcagaaacatc-aaccgattcctgactattctc 985  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | ||||||||| ||| ||||| |||||||||||    
T  17933564 tttgttgtttttcctcttttacccctcctttacccatccttcaatcctcgcattttatttagaaacatcaaactgattcttgactattctc 17933654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 813 - 888
Target Start/End: Original strand, 31209023 - 31209098
Alignment:
Q  813 tgtgttgtgatgtccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttca 888  Q
    |||| |||| ||| || |||||||| ||||  ||||||||||||||||||||| |||||||| |  ||||||||||    
T  31209023 tgtgatgtgttgtacatgtgtcatcaagtcagccacgtgtacaaggaccattttgattgaaaagcaacaaatttca 31209098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 665 - 727
Target Start/End: Original strand, 24662477 - 24662539
Alignment:
Q  665 taggagtgaaacatcaacttcgtccttgagtttgtaaggattaatcaaattcgtcccccaatt 727  Q
    |||||||||| |||||||||||||||||| |||| | | ||   |||||||||||||||||||    
T  24662477 taggagtgaatcatcaacttcgtccttgaatttgcacgaatatgtcaaattcgtcccccaatt 24662539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 539
Target Start/End: Complemental strand, 32845259 - 32844733
Alignment:
Q  7 accatggtctgattgcatccatcaatacccaatatcaactttcaattaataattttacacttgttattatatattgttcttggtgttcttattattgnnn 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||       
T  32845259 accatggtctgattgcatccatcaatacccaatatcaactttcaattaataattttacacttgttattatatattgttcttagtgttcttattaatgttt 32845160  T
Q  107 nnnnnagaagtattaatgctgttcttgtgtttaaggttgtgcaagaaaagtactattgnnnnnnnggggtttctatattttattattgtaaaagcatgtt 206  Q
         ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||       |||||||||||||||||||||| ||||||||||||    
T  32845159 tttt-agaagtattaatgttgttcttgtgtttaagattgtgcaagaaaaatactattgaaaaaaaggggtttctatattttattattttaaaagcatgtt 32845061  T
Q  207 gatggatccagcccaagatatcaataggtagtgttag--tgtatcatactcagccgttatatatggcgccagatgtannnnnnnnnnnnaccgttgttgc 304  Q
    | |||||||||||| ||||||||||||| ||||||||  ||||||||||||||||  ||||||||||||||||||              |||||||||||    
T  32845060 ggtggatccagccctagatatcaataggaagtgttagcgtgtatcatactcagcctatatatatggcgccagatgg-tattttttttttaccgttgttgc 32844962  T
Q  305 tggttttgtgcgtcttacacagaccaaaccttaataatactttgttgttnnnnnnnnnngaggaagtgtatcatagccagctctatcaaattcatgatta 404  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||    
T  32844961 tggttttgtgcatcttacacagaccaaaccttaataatactttgttgttaataaaaa---aggaagtgtatcatagccagctctatcaaattcatgatta 32844865  T
Q  405 tttggatgcttagtcatatgagagtgtgcaatatctacttcattgtatcattgtgaaaaggatcaatgtgaggtagatcaaattaactttgaagtactat 504  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||    
T  32844864 tttggatgcttagtcatatgagagtgtgcaatatctacatcattgtatcattgtgaaaatgatcaatgt---gtagatcaaattaactttgaagtactat 32844768  T
Q  505 aagaataaggaggaatggagttacaccacttgtga 539  Q
    |||||||||||||||||||||||||||||||||||    
T  32844767 aagaataaggaggaatggagttacaccacttgtga 32844733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 534 - 996
Target Start/End: Complemental strand, 32844605 - 32844137
Alignment:
Q  534 ttgtgagtaggacatgcaaatttattcatatagttaattctcttgagttgttgaataaaagttacacacaattcttcaagagtaacaaaggctaacaaag 633  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32844605 ttgtgagtaggacatgcaaatttattcatatagttaattctcttgagttgttgaataaaaattacacacaattcttcaagagtaacaaaggctaacaaag 32844506  T
Q  634 gtatgaatcacaaagtgtcaaaccnnnnnnnta----ggagtgaaacatcaacttcgtccttgagtttgtaaggattaatcaaattcgtcccccaattag 729  Q
    | ||||||||| ||||||||||||        |    ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  32844505 gcatgaatcactaagtgtcaaaccaaaaaaaaaaaaaggaatgaaacatcaacttcgtccttgagtttgcaaggattaatcaaattcgtcctccaattag 32844406  T
Q  730 tccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgatgtccac 829  Q
    ||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32844405 tccctaaatttaacacatgtccgtcaaattcatccctctgcccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgctgtgatgtccac 32844306  T
Q  830 gtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttcactttca-atttttgttgtttttcctc-tttacccctccttt 927  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||| |||||||||| |||    
T  32844305 gtgtcatctagtcctccacgtgtacaacgaccatttcgattgaaacgatacaaatttcacttccattttttttttgtttttcctcttttacccctctttt 32844206  T
Q  928 acccatccttcgatcctcgcatttta-tcagaaacatc-aaccgattcctgactattctcttctcgctaaa 996  Q
    ||||||||||| |||||| ||||||| ||||||||||| ||||||||||| ||| |  |||||||||||||    
T  32844205 acccatccttcaatcctcacattttattcagaaacatcaaaccgattccttactct--tcttctcgctaaa 32844137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 32831978 - 32831824
Alignment:
Q  7 accatggtctgattgcatccatcaatacccaatatcaactttcaattaataattttacacttgttattatatattgttcttggtgttcttattattgnnn 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||       
T  32831978 accatggtctgattgcatccatcaatacccaatatcaactttcaattgataattttacacttgttattatatattgttcttggtgttcttattaatg-tt 32831880  T
Q  107 nnnnnagaagtattaatgctgttcttgtgtttaaggttgtgcaagaaaagtactat 162  Q
         ||||||||||||| |||||||||||||||| ||||  ||||||| ||||||    
T  32831879 attttagaagtattaatgttgttcttgtgtttaagattgtataagaaaaatactat 32831824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 724 - 888
Target Start/End: Complemental strand, 23877029 - 23876867
Alignment:
Q  724 aattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgat 823  Q
    |||||||| |||||||||||| | |||| |||||||||| |||| |||||||| ||| |||||||| ||||| |||||    | |||  |||||||||||    
T  23877029 aattagtctctgaatttaacaaacgtccatcaaattcatccctccgtccaatccctccgttagtgaggctaacgtgtcgtcctacattttgtgttgtgat 23876930  T
Q  824 gtccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttca 888  Q
    ||||| |||||||||||||  ||||  |||||||||||| || |||  ||||  |||||||||||    
T  23876929 gtccatgtgtcatctagtcagccac--gtacaaggaccaatttgatgaaaacattacaaatttca 23876867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 726 - 888
Target Start/End: Complemental strand, 25535298 - 25535136
Alignment:
Q  726 ttagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgatgt 825  Q
    ||||||||||||||||||| | ||||  ||||||||| |||| |||||| | |||  ||||  | ||| | |||||    | |||| | |||||||||||    
T  25535298 ttagtccctgaatttaacagacgtccaccaaattcatccctccgtccaacccctccattagcaaggctgacgtgtcgtcctacatgctttgttgtgatgt 25535199  T
Q  826 ccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttca 888  Q
    |||||||||||| ||||  |||||| ||||||||||| || ||| |||||| |||||||||||    
T  25535198 ccacgtgtcatccagtcggccacgtctacaaggaccaatttgatggaaacgttacaaatttca 25535136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 450
Target Start/End: Complemental strand, 32831608 - 32831548
Alignment:
Q  390 tcaaattcatgattatttggatgcttagtcatatgagagtgtgcaatatctacttcattgt 450  Q
    ||||| |||||||||||||||||||    |||||||||||||||||||||||| |||||||    
T  32831608 tcaaaatcatgattatttggatgctcgaccatatgagagtgtgcaatatctacatcattgt 32831548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 739 - 888
Target Start/End: Complemental strand, 42559948 - 42559799
Alignment:
Q  739 ttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgatgtccacgtgtcatct 838  Q
    |||||| | |||| |||||||||| |||| ||||||||||||||||||||| ||| ||| |||    | |||| ||||||||||||||||||||| |||     
T  42559948 ttaacagacgtccatcaaattcatccctccgtccaatctctctgttagtgaggctgatgcgtcgtcctacatgttgtgttgtgatgtccacgtgttatcc 42559849  T
Q  839 agtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttca 888  Q
    ||||  ||| ||||||||||||||||| ||| |||||| |||||||||||    
T  42559848 agtcagccatgtgtacaaggaccattttgatggaaacgttacaaatttca 42559799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 734 - 862
Target Start/End: Original strand, 35008917 - 35009045
Alignment:
Q  734 tgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgatgtccacgtgt 833  Q
    ||||||||||  |||| | |||||||||| | || ||||||| ||| ||||||||||| | | ||||||   ||||||||||||| || ||| |||||||    
T  35008917 tgaatttaactgatgttcatcaaattcatccatccgtccaatatctatgttagtgatgttgaggtgtcatcatgcatgatgtgttatgttgtacacgtgt 35009016  T
Q  834 catctagtcctccacgtgtacaaggacca 862  Q
    |||| ||||  ||||||||||| ||||||    
T  35009017 catccagtcaaccacgtgtacagggacca 35009045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 724 - 888
Target Start/End: Original strand, 366771 - 366935
Alignment:
Q  724 aattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgat 823  Q
    ||||||||||||||||||||| | |||  |||||||||| |||| |||||||| | | |||||||| ||| |  ||||  | |||||| |||||||||||    
T  366771 aattagtccctgaatttaacagacgtctatcaaattcatccctccgtccaatcccaccgttagtgaggctgacatgtcgttatgcatgttgtgttgtgat 366870  T
Q  824 gtccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttca 888  Q
    |||||| |||||||  |||  ||||||||| |||||||| || ||| |||||| |||||||||||    
T  366871 gtccacatgtcatcccgtcagccacgtgtagaaggaccaatttgatggaaacgttacaaatttca 366935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 724 - 888
Target Start/End: Original strand, 7401966 - 7402130
Alignment:
Q  724 aattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgat 823  Q
    |||| |||||||||||||||| | |||| ||||||||||  |||  |||||| |||| |||||||||||| | ||| |  | | |||| |||| |||| |    
T  7401966 aattcgtccctgaatttaacagacgtccatcaaattcatcactccatccaatatctccgttagtgatgctgaggtgccgctcttcatgttgtgctgtgtt 7402065  T
Q  824 gtccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttca 888  Q
    || |||| |||||| ||||  |||||||||||| ||||| || ||  ||||||  ||||||||||    
T  7402066 gtacacgcgtcatccagtcagccacgtgtacaaagaccaatttgacggaaacgcaacaaatttca 7402130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 806 - 862
Target Start/End: Original strand, 13034828 - 13034884
Alignment:
Q  806 tgcatgatgtgttgtgatgtccacgtgtcatctagtcctccacgtgtacaaggacca 862  Q
    |||||| ||||||||  ||| ||||||||||||||||  ||||||||||||||||||    
T  13034828 tgcatgctgtgttgtcctgtacacgtgtcatctagtcagccacgtgtacaaggacca 13034884  T

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Target: chr5 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 724 - 888
Target Start/End: Original strand, 27075893 - 27076057
Alignment:
Q  724 aattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgat 823  Q
    ||||||| ||||||||||||| | |||| |||||||||| |||| || ||||| | | |||||||| | | | ||||||   ||||||||||| | ||||    
T  27075893 aattagttcctgaatttaacagacgtccatcaaattcatccctccgttcaatccccccgttagtgaggttgacgtgtcatcctgcatgatgtgctttgat 27075992  T
Q  824 gtccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttca 888  Q
    ||||||||||||| |||||  ||||||||| |||||||| || ||| |||||| |||||||||||    
T  27075993 gtccacgtgtcatttagtcagccacgtgtataaggaccaatttgatggaaacgttacaaatttca 27076057  T

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Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 724 - 888
Target Start/End: Complemental strand, 26584868 - 26584704
Alignment:
Q  724 aattagtccctgaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgat 823  Q
    ||||| ||||| ||||||| | | |||| |||||||||| |||| ||||| || ||||| |||||| ||| | |||||    |||||| |||||||||||    
T  26584868 aattaatccctcaatttaatagacgtccatcaaattcatccctccgtccattccctctggtagtgaggctgacgtgtcgtcctgcatgttgtgttgtgat 26584769  T
Q  824 gtccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttca 888  Q
    |||||||| ||||| ||||  |||||||||||| ||| | || ||| |||||| |||||||||||    
T  26584768 gtccacgtatcatccagtcagccacgtgtacaatgacgaatttgatggaaacgttacaaatttca 26584704  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 806 - 899
Target Start/End: Original strand, 361600 - 361693
Alignment:
Q  806 tgcatgatgtgttgtgatgtccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttcactttcaatttt 899  Q
    |||||| |||| |||| ||| ||| ||||||| ||||  ||||||||||||||||||||| |||||||| |  |||||||||| ||| ||||||    
T  361600 tgcatgttgtgatgtgttgtacacatgtcatcaagtcagccacgtgtacaaggaccattttgattgaaaagcaacaaatttcattttaaatttt 361693  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 818 - 888
Target Start/End: Original strand, 4046438 - 4046508
Alignment:
Q  818 tgtgatgtccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttca 888  Q
    |||||| | ||||||||||||||||  |||||| ||||||||||| || |||  ||||| |||||||||||    
T  4046438 tgtgattttcacgtgtcatctagtcagccacgtatacaaggaccaatttgatgaaaacgttacaaatttca 4046508  T

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Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 735 - 886
Target Start/End: Original strand, 11788405 - 11788556
Alignment:
Q  735 gaatttaacacatgtccgtcaaattcattcctcagtccaatctctctgttagtgatgctaatgtgtcaatgtgcatgatgtgttgtgatgtccacgtgtc 834  Q
    |||||||||| | |||| |||||||||| |||| ||||||| ||||||||||||||||| | |||||    || ||| ||||||||  ||| ||||||||    
T  11788405 gaatttaacagacgtccatcaaattcatccctccgtccaatatctctgttagtgatgctgaggtgtcttcttgtatgttgtgttgttttgtacacgtgtc 11788504  T
Q  835 atctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaattt 886  Q
    || |||||  ||| |||||||||||||| || ||| ||||||  ||||||||    
T  11788505 atatagtcagccatgtgtacaaggaccaatttgatggaaacgcaacaaattt 11788556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 844 - 900
Target Start/End: Original strand, 10542730 - 10542786
Alignment:
Q  844 tccacgtgtacaaggaccatttcgattgaaacgatacaaatttcactttcaattttt 900  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  10542730 tccacgtgtacaaggaccattttgattgaaacgattcaaatttcacttccaattttt 10542786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 825 - 888
Target Start/End: Original strand, 4613697 - 4613760
Alignment:
Q  825 tccacgtgtcatctagtcctccacgtgtacaaggaccatttcgattgaaacgatacaaatttca 888  Q
    |||||||||||||  ||||||||||||||||||||  |||| |||||||||  |||||||||||    
T  4613697 tccacgtgtcatcaggtcctccacgtgtacaaggatgattttgattgaaacattacaaatttca 4613760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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