View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-21 (Length: 387)
Name: NF1614-Insertion-21
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 168 - 387
Target Start/End: Complemental strand, 42664634 - 42664413
Alignment:
| Q |
168 |
tgaatattggtaagtggagagagtctttcgattctagtctatgctagattgctaccatgaagaa-gnnnnnnngaaatgtttaattctgcacgttggtcg |
266 |
Q |
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| T |
42664634 |
tgaatattggtaattgaagagagtttttcgattctagtccatgctagattgctaccatgaagaaagaaaaagagaaatgtttaattatgcacgttggtcg |
42664535 |
T |
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| Q |
267 |
actaaactcacaatctgatagttacgaattattttaattacattacgttatcctgttctac-cataattcaccatttttatgacgtaaatatcgttatgg |
365 |
Q |
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| T |
42664534 |
attaaattcacaatctgatagttacgaattattttaattacattacattatcctattctacacataattcaccatttttatgaggtaaatatcattatgg |
42664435 |
T |
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| Q |
366 |
tttatgatcattaacattgttg |
387 |
Q |
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| T |
42664434 |
tttatgatcattaacattgttg |
42664413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 42664835 - 42664718
Alignment:
| Q |
8 |
cctttctcatcctttactcgttgcatgtttgaaatgccaatatgatgaaatacggtg----annnnnnnnatatactccaaagcgtagttttgttaaaat |
103 |
Q |
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| T |
42664835 |
cctttctcatcctttactcgttgcatgtttgaaatgccaatatgatgaaatacggtgtattttttttttattatactctaaagcgtagttttgttaaaat |
42664736 |
T |
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| Q |
104 |
attgaatcatagtaagtc |
121 |
Q |
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| T |
42664735 |
attgaatcatagtaagtc |
42664718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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