View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614-Insertion-22 (Length: 378)

Name: NF1614-Insertion-22
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614-Insertion-22
NF1614-Insertion-22
[»] chr3 (14 HSPs)
chr3 (152-312)||(6789464-6789624)
chr3 (243-345)||(6550327-6550429)
chr3 (238-340)||(6849109-6849211)
chr3 (7-86)||(6789690-6789768)
chr3 (7-86)||(17402864-17402944)
chr3 (7-86)||(1140071-1140150)
chr3 (253-340)||(6527528-6527615)
chr3 (213-340)||(6938429-6938556)
chr3 (257-345)||(6558852-6558940)
chr3 (249-339)||(6797236-6797326)
chr3 (165-213)||(17403025-17403073)
chr3 (266-330)||(6785697-6785761)
chr3 (148-211)||(1139958-1140021)
chr3 (286-339)||(9720624-9720677)
[»] scaffold0425 (1 HSPs)
scaffold0425 (249-340)||(12214-12305)
[»] chr8 (13 HSPs)
chr8 (7-86)||(30224300-30224379)
chr8 (7-86)||(5567496-5567575)
chr8 (7-86)||(25249076-25249155)
chr8 (7-86)||(3375506-3375584)
chr8 (148-213)||(30224173-30224238)
chr8 (148-213)||(5567369-5567434)
chr8 (17-86)||(36535924-36535993)
chr8 (148-211)||(31032222-31032285)
chr8 (148-211)||(3375646-3375709)
chr8 (160-213)||(5567676-5567729)
chr8 (19-86)||(3379208-3379275)
chr8 (34-86)||(6428810-6428862)
chr8 (19-86)||(31032097-31032164)
[»] chr4 (15 HSPs)
chr4 (7-86)||(7040431-7040510)
chr4 (7-86)||(23564757-23564836)
chr4 (7-86)||(18656178-18656257)
chr4 (148-215)||(7040302-7040369)
chr4 (148-213)||(23564898-23564963)
chr4 (148-216)||(18656048-18656116)
chr4 (148-214)||(3274663-3274729)
chr4 (165-215)||(52518698-52518748)
chr4 (25-86)||(23566449-23566510)
chr4 (165-213)||(52520542-52520590)
chr4 (29-86)||(3529251-3529308)
chr4 (18-86)||(54296498-54296567)
chr4 (29-85)||(23985845-23985901)
chr4 (34-86)||(52520671-52520723)
chr4 (34-86)||(52518829-52518881)
[»] chr2 (5 HSPs)
chr2 (7-86)||(29758190-29758269)
chr2 (148-214)||(29758062-29758128)
chr2 (148-211)||(8759206-8759269)
chr2 (7-68)||(8759146-8759207)
chr2 (156-217)||(31155713-31155774)
[»] chr6 (16 HSPs)
chr6 (7-86)||(5376947-5377027)
chr6 (7-86)||(5378802-5378882)
chr6 (9-86)||(19645384-19645461)
chr6 (19-85)||(1088747-1088813)
chr6 (148-213)||(9414962-9415027)
chr6 (165-214)||(5376817-5376866)
chr6 (156-213)||(9415050-9415107)
chr6 (165-213)||(5378673-5378721)
chr6 (34-86)||(15868462-15868514)
chr6 (7-54)||(15149120-15149167)
chr6 (148-211)||(15149268-15149331)
chr6 (34-86)||(15866650-15866702)
chr6 (151-211)||(19645526-19645586)
chr6 (34-86)||(33866169-33866221)
chr6 (34-83)||(33869319-33869368)
chr6 (173-213)||(30376225-30376265)
[»] chr7 (13 HSPs)
chr7 (7-86)||(20046577-20046658)
chr7 (9-86)||(44963233-44963310)
chr7 (165-214)||(28126657-28126706)
chr7 (165-213)||(20046739-20046787)
chr7 (165-213)||(28124830-28124878)
chr7 (148-211)||(44963108-44963171)
chr7 (168-213)||(4895525-4895570)
chr7 (34-86)||(37405559-37405611)
chr7 (148-211)||(44962228-44962291)
chr7 (34-86)||(4895654-4895706)
chr7 (34-86)||(28124697-28124749)
chr7 (34-86)||(28126524-28126576)
chr7 (7-40)||(28014355-28014388)
[»] chr1 (10 HSPs)
chr1 (8-86)||(17449381-17449458)
chr1 (148-213)||(48940619-48940684)
chr1 (165-213)||(16808821-16808869)
chr1 (34-86)||(3282871-3282923)
chr1 (34-86)||(3284572-3284624)
chr1 (34-86)||(9312099-9312151)
chr1 (148-206)||(17449261-17449319)
chr1 (34-86)||(9310482-9310534)
chr1 (34-86)||(16808688-16808740)
chr1 (15-86)||(48941670-48941743)
[»] scaffold0057 (1 HSPs)
scaffold0057 (19-86)||(58856-58923)
[»] scaffold0251 (1 HSPs)
scaffold0251 (34-86)||(6296-6348)
[»] chr5 (3 HSPs)
chr5 (7-82)||(25076197-25076273)
chr5 (7-82)||(25134166-25134242)
chr5 (34-86)||(39787168-39787220)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 152 - 312
Target Start/End: Complemental strand, 6789624 - 6789464
Alignment:
Q  152 tgattactaactatagtctaactaccttaactcactacacataacttccaactattttaacaaaaagtctcgatttacatgcctttacataaagattttg 251  Q
    ||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789624 tgattaccaactctagtctaactaccttaactaactacacattacttccaactattttaacaaaaagtctcgatttacatgcctttacataaagattttg 6789525  T
Q  252 tgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789524 tgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagat 6789464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 243 - 345
Target Start/End: Complemental strand, 6550429 - 6550327
Alignment:
Q  243 aagattttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaagtg 342  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  || |||||||||||||| ||| ||||||| ||    
T  6550429 aagattttgtgccagtgagataattatatgttatcttaactatgtttgaatgtaaaactagggaaagaataatgtgatgcaatttgtattaccaaaaatg 6550330  T
Q  343 agt 345  Q
    |||    
T  6550329 agt 6550327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 340
Target Start/End: Complemental strand, 6849211 - 6849109
Alignment:
Q  238 acataaagattttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaa 337  Q
    ||||||| | |||||||||||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||  ||||||||||||||| |||||    
T  6849211 acataaaaaatttgtgccagtgagataattatatgtgatcttaactatgtttgaatgtaaaactacggaaaagatgacatgatgcaatttatattaccaa 6849112  T
Q  338 aag 340  Q
    |||    
T  6849111 aag 6849109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 6789768 - 6789690
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  6789768 actcattgtagaa-tgaatagattgaaaaaagatagtgaatgagtacaatagtattcctatatatagagattagtttgag 6789690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 17402864 - 17402944
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatat-agagattagtttgag 86  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  17402864 actcattgtagaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 17402944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 1140150 - 1140071
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  1140150 actcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 1140071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 6527615 - 6527528
Alignment:
Q  253 gccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaag 340  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||  ||||||||||||||| || |||||    
T  6527615 gccagtgagataattatatgtgatcttaactatgtttgaatgtaaaactagggaaaagatgacatgatgcaatttatattactaaaag 6527528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 213 - 340
Target Start/End: Original strand, 6938429 - 6938556
Alignment:
Q  213 aaaaagtctcgat-ttacatgccttt-acataaagattttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaag 310  Q
    ||||||||||||| ||| | |||||| |||||||||||||||||||||||||| |||||||||||| |||    ||||||||| ||||| |||||  |||    
T  6938429 aaaaagtctcgatattaaaagcctttcacataaagattttgtgccagtgagatgattatatgttattttaataatgtttgaatctaaaaataggg--aag 6938526  T
Q  311 atgatgtgatgcaatttatatcaccaaaag 340  Q
    ||||||||||||||||||||| ||||||||    
T  6938527 atgatgtgatgcaatttatattaccaaaag 6938556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 345
Target Start/End: Complemental strand, 6558940 - 6558852
Alignment:
Q  257 gtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaagtgagt 345  Q
    ||||||||||||||||||||||||  | ||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||| ||||    
T  6558940 gtgagataattatatgttatcttaattatgtttgaatttaaaactagggaagagatgatgtgttgcaatttatattaccaaaagagagt 6558852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 6797326 - 6797236
Alignment:
Q  249 ttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaa 339  Q
    ||||| ||||||||||||||| ||||||||||  | || |||||| ||||| |||||||||| |||||||||||||||||||| |||||||    
T  6797326 ttgtgtcagtgagataattatgtgttatcttaattatgattgaatttaaaaatagggaaaagttgatgtgatgcaatttatattaccaaaa 6797236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 17403025 - 17403073
Alignment:
Q  165 tagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17403025 tagtctaactaccttaactaactacacataacttccaactattttaaca 17403073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 6785761 - 6785697
Alignment:
Q  266 ttatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttata 330  Q
    |||||||||||||||  | |||||||| ||||| ||||||||| |||||||||| ||||||||||    
T  6785761 ttatatgttatcttaattatgtttgaacgtaaagctagggaaaggatgatgtgaagcaatttata 6785697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 1140021 - 1139958
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaa 211  Q
    ||||||||||||||||  |||| ||||||||||||| ||| || ||||||||||||||| ||||    
T  1140021 tagttgattactaactcaagtccaactaccttaactaactccatataacttccaactatcttaa 1139958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 9720677 - 9720624
Alignment:
Q  286 gtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaa 339  Q
    ||||| |||||| ||||||||||| |||||| ||||| |||||||| |||||||    
T  9720677 gtttggatgtaacactagggaaaatatgatgcgatgctatttatattaccaaaa 9720624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 12305 - 12214
Alignment:
Q  249 ttgtgccagtgagataattatatgttatcttagctgtgtttgaatgtaaaactagggaaaagatgatgtgatgcaatttatatcaccaaaag 340  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||    
T  12305 ttgtgccagtgagataattatatgtgatcttaactatgtttgaatgtaaaactacggaaaagatgacatgatgcaatttatattaccaaaag 12214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 30224379 - 30224300
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  30224379 actcattgtagaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 30224300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 5567575 - 5567496
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  5567575 actcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatagttttcctatatatagagattagtttgag 5567496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 25249155 - 25249076
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  25249155 actcattgtagaaatgaatagattgataaaagatcatgaatgagtacaatagtgttcctatatatagagattagtttgag 25249076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 3375506 - 3375584
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||||||||||||||||||| |||| |||||| ||||||| |  ||||||||||||||||||||||||||    
T  3375506 actcattgtagaaatgaatagattgaaaaa-gataatgaatgggtacaatagagttcctatatatagagattagtttgag 3375584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 30224238 - 30224173
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||    
T  30224238 tagttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 30224173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 5567434 - 5567369
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    |||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| |||||||||||    
T  5567434 tagttgattactaactctagtctaactactttaactaacttcacataacttccagctattttaaca 5567369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 36535924 - 36535993
Alignment:
Q  17 gaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||||| |||||||  |||||||||||||  ||||| |||||||||||||||||||||||    
T  36535924 gaaatgaatagattgataaaagatgatgaatgagtacaacagtattgctatatatagagattagtttgag 36535993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 31032222 - 31032285
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaa 211  Q
    ||||||||||||||||  |||||||||||||||||| ||| |||||||||||||||||| ||||    
T  31032222 tagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 31032285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 3375646 - 3375709
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaa 211  Q
    |||||||||||||||   |||||||||||||||||| ||| |||||||||||||||||| ||||    
T  3375646 tagttgattactaacagaagtctaactaccttaactaactccacataacttccaactatcttaa 3375709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 5567676 - 5567729
Alignment:
Q  160 aactatagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    |||| ||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  5567676 aactctagtctaactaccttaactaacttcacataacttccagctattttaaca 5567729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 3379208 - 3379275
Alignment:
Q  19 aatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||| |||| ||  |||||||||||||| || |||||  |||||||||||||||||||    
T  3379208 aatgaatagattgataaaaaatgatgaatgagtacaatagttttccttaatatagagattagtttgag 3379275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 6428862 - 6428810
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||  ||||||| |||||| || ||||||||||||||||||||||||||    
T  6428862 aaaagatgatgaatgattacaatagtgttcctatatatagagattagtttgag 6428810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 31032097 - 31032164
Alignment:
Q  19 aatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||| |||||||  |||||||||  | |  | ||||||||||||||||||||||||||    
T  31032097 aatgaatagattgataaaagatcatgaatgagtgtagtaatgttcctatatatagagattagtttgag 31032164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 7040510 - 7040431
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  7040510 actcattgtagaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 7040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 23564757 - 23564836
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  23564757 actcattgtagaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 23564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 18656257 - 18656178
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  18656257 actcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatagttttcctatatatagagattagtttgag 18656178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 7040369 - 7040302
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaacaaa 215  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  7040369 tagttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaacaaa 7040302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 23564898 - 23564963
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||    
T  23564898 tagttgattactaactctagtctaactaccttaactaactccacataacttccaactatcttaaca 23564963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 18656116 - 18656048
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaacaaaa 216  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||||||||||||  ||||||||||||||    
T  18656116 tagttgattactaactctagtctaactaccttaactaacttcacataacttccggctattttaacaaaa 18656048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 3274663 - 3274729
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaacaa 214  Q
    ||||||||||||||||||||| | |||||||||||| ||| || |||||||||||||||||||||||    
T  3274663 tagttgattactaactatagttttactaccttaactaacttcatataacttccaactattttaacaa 3274729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 52518748 - 52518698
Alignment:
Q  165 tagtctaactaccttaactcactacacataacttccaactattttaacaaa 215  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52518748 tagtctaactaccttaactaactacacataacttccaactattttaacaaa 52518698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 23566449 - 23566510
Alignment:
Q  25 tagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  23566449 tagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 23566510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 52520590 - 52520542
Alignment:
Q  165 tagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52520590 tagtctaactaccttaactaactacacataacttccaactattttaaca 52520542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 3529251 - 3529308
Alignment:
Q  29 ttgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  3529251 ttgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 3529308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 54296567 - 54296498
Alignment:
Q  18 aaatgaatagattgaa-aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||| ||||||  |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  54296567 aaatgaattgattgattaaaagatcatgaatgagtacaatagtgttcctatatatagagattagtttgag 54296498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 23985901 - 23985845
Alignment:
Q  29 ttgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttga 85  Q
    |||| |||||||  |||||||||||||| || |||||||||||||||||||||||||    
T  23985901 ttgataaaagatggtgaatgagtacaatagtgttcctatatatagagattagtttga 23985845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 52520723 - 52520671
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  52520723 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 52520671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 52518881 - 52518829
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||  ||| |||||||||  || ||||||||||||||||||||||||||    
T  52518881 aaaagatgatgattgagtacaacagtgttcctatatatagagattagtttgag 52518829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 29758269 - 29758190
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  29758269 actcattgtagaaatgaatagattgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 29758190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 29758128 - 29758062
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaacaa 214  Q
    |||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  29758128 tagttgattactaagtctagtctaactaccttaactaactccacataacttccaactatcttaacaa 29758062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 8759206 - 8759269
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaa 211  Q
    ||||||||||||||||  |||||||||||||||||| ||| |||||||||||||||||| ||||    
T  8759206 tagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 8759269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 8759146 - 8759207
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctata 68  Q
    |||||||||||||||||| ||||||| |||||||  |||||||||||||| || ||||||||    
T  8759146 actcattgtagaaatgaacagattgataaaagatgatgaatgagtacaatagtgttcctata 8759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 31155713 - 31155774
Alignment:
Q  156 tactaactatagtctaactaccttaactcactacacataacttccaactattttaacaaaaa 217  Q
    |||||||| |||| |||||||||||||| ||| | ||||||||||||||||| |||||||||    
T  31155713 tactaactctagtttaactaccttaactaactccgcataacttccaactattctaacaaaaa 31155774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 5377027 - 5376947
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatat-agagattagtttgag 86  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  5377027 actcattgtagaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 5376947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 5378882 - 5378802
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatat-agagattagtttgag 86  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  5378882 actcattgtagaaatgaatagattgataaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 5378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 19645384 - 19645461
Alignment:
Q  9 tcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||||| || ||| ||||||||||||||||||||||    
T  19645384 tcattgtagaaataaatagattgataaaagataatgaatgagtacaatagtgttcttatatatagagattagtttgag 19645461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 1088747 - 1088813
Alignment:
Q  19 aatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttga 85  Q
    |||||||||||||| |||||||  |||||||||||||| || |||||||||||||||||||||||||    
T  1088747 aatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttga 1088813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 9415027 - 9414962
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    |||||||| ||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  9415027 tagttgatcactaactctagtctaactaccttaactaactccgcataacttccaactattttaaca 9414962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 5376866 - 5376817
Alignment:
Q  165 tagtctaactaccttaactcactacacataacttccaactattttaacaa 214  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  5376866 tagtctaactaccttaactaactacatataacttccaactattttaacaa 5376817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 9415107 - 9415050
Alignment:
Q  156 tactaactatagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    |||||||| |||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  9415107 tactaactctagtctaacttccttaactaactccacataacttccaactattttaaca 9415050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 5378721 - 5378673
Alignment:
Q  165 tagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  5378721 tagtctaactaccttaactaactacacataacttccaactaatttaaca 5378673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 15868514 - 15868462
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  15868514 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 15868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 15149120 - 15149167
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtaca 54  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||    
T  15149120 actcattgtagaaatgaatagattgataaaagataatgaatgagtaca 15149167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 15149268 - 15149331
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaa 211  Q
    ||||||||||||||||  |||||||||||||||||| ||| | |||||||||||||||| ||||    
T  15149268 tagttgattactaactcaagtctaactaccttaactaactccgcataacttccaactatcttaa 15149331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 15866702 - 15866650
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||| |||||||||||||| || |||||| |||||||||||||||||||    
T  15866702 aaaagataatgaatgagtacaatagtgttcctaaatatagagattagtttgag 15866650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 19645526 - 19645586
Alignment:
Q  151 ttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaa 211  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||| |||| |||||| ||||    
T  19645526 ttgattactaactctagtctaactaccttaactaactccacatatcttctaactatcttaa 19645586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 33866221 - 33866169
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||| ||||    
T  33866221 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtctgag 33866169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 33869368 - 33869319
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagttt 83  Q
    |||||||| |||||| ||||||| || |||||||||||||||||||||||    
T  33869368 aaaagatagtgaatgcgtacaatagtgttcctatatatagagattagttt 33869319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 30376265 - 30376225
Alignment:
Q  173 ctaccttaactcactacacataacttccaactattttaaca 213  Q
    |||| |||||| ||| |||||||||||||||||||||||||    
T  30376265 ctacgttaactaactccacataacttccaactattttaaca 30376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 20046577 - 20046658
Alignment:
Q  7 actcattgtagaaatgaatagattga-aaaaagatattgaatgagtacaatcgtattcctatatat-agagattagtttgag 86  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  20046577 actcattgtagaaatgaatagattgataaaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgag 20046658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 44963310 - 44963233
Alignment:
Q  9 tcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||||||||||||| |||||||  |||||||||||||| || ||||||||||||||||||| ||||||    
T  44963310 tcattgtagaaatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattaatttgag 44963233  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 28126657 - 28126706
Alignment:
Q  165 tagtctaactaccttaactcactacacataacttccaactattttaacaa 214  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28126657 tagtctaactaccttaactaactacacataacttccaactattttaacaa 28126706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 20046739 - 20046787
Alignment:
Q  165 tagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20046739 tagtctaactaccttaactaactacacataacttccaactattttaaca 20046787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 28124830 - 28124878
Alignment:
Q  165 tagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28124830 tagtctaactaccttaactaactacacataacttccaactattttaaca 28124878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 44963171 - 44963108
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaa 211  Q
    ||||||||||||||||  |||||||||||||||||| ||| |||||||||||||||||| ||||    
T  44963171 tagttgattactaactcaagtctaactaccttaactaactccacataacttccaactatcttaa 44963108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 4895570 - 4895525
Alignment:
Q  168 tctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  4895570 tctaactaccttaactaactacacataacttccaactattttaaca 4895525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 37405559 - 37405611
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  37405559 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 37405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 44962291 - 44962228
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaa 211  Q
    |||||||||||| |||  |||||||||||||||||| ||| |||||||||||||||||| ||||    
T  44962291 tagttgattactcactcaagtctaactaccttaactaacttcacataacttccaactatgttaa 44962228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 4895706 - 4895654
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  4895706 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 4895654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 28124697 - 28124749
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  28124697 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28124749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 28126524 - 28126576
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  28126524 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 28126576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 28014355 - 28014388
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagat 40  Q
    |||||||||||||||||||||||||| |||||||    
T  28014355 actcattgtagaaatgaatagattgataaaagat 28014388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 17449458 - 17449381
Alignment:
Q  8 ctcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||    
T  17449458 ctcattgtagacatgaatagattgaaaaa-gataatgaatgagtacaatagtgttcctatatatagagattagtttgag 17449381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 48940684 - 48940619
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    |||||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  48940684 tagttgattactaactcttgtctaactaccttaactaactccacataacttccaactattttaaca 48940619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 16808821 - 16808869
Alignment:
Q  165 tagtctaactaccttaactcactacacataacttccaactattttaaca 213  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16808821 tagtctaactaccttaactaactacacataacttccaactattttaaca 16808869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 3282923 - 3282871
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  3282923 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3282871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 3284624 - 3284572
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  3284624 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 3284572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 9312151 - 9312099
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  9312151 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgag 9312099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 17449319 - 17449261
Alignment:
Q  148 tagttgattactaactatagtctaactaccttaactcactacacataacttccaactat 206  Q
    ||||||||||||||||  |||| ||||||||||||| ||| || |||||||||||||||    
T  17449319 tagttgattactaactcaagtccaactaccttaactaactccatataacttccaactat 17449261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 9310534 - 9310482
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||| |||||||||||||| || |||||||||||||| |||| ||||||    
T  9310534 aaaagataatgaatgagtacaatagtgttcctatatatagatattaatttgag 9310482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 16808688 - 16808740
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||  |||||||||||||| || ||| ||||||||||||||||||||||    
T  16808688 aaaagatgatgaatgagtacaatagtgttcatatatatagagattagtttgag 16808740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 48941743 - 48941670
Alignment:
Q  15 tagaaatgaatagattgaa--aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    ||||||||||||||||  |  |||||||| |||||||||||||| || ||  ||| ||||||||||||||||||    
T  48941743 tagaaatgaatagatttgattaaaagatactgaatgagtacaatagtgtttatatgtatagagattagtttgag 48941670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 58923 - 58856
Alignment:
Q  19 aatgaatagattgaaaaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||||||||| |||||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  58923 aatgaatagattgataaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgag 58856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 6348 - 6296
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  6348 aaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgag 6296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 25076197 - 25076273
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcg-tattcctatatatagagattagtt 82  Q
    ||||||| |||||||||||| ||||| |||||||  |||| ||||||||| | | ||||||||| ||||||||||||    
T  25076197 actcattatagaaatgaatatattgataaaagatgatgaaagagtacaattgttgttcctatatctagagattagtt 25076273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 25134166 - 25134242
Alignment:
Q  7 actcattgtagaaatgaatagattgaaaaaagatattgaatgagtacaatcg-tattcctatatatagagattagtt 82  Q
    ||||||| |||||||||||| ||||| |||||||  |||| ||||||||| | | ||||||||| ||||||||||||    
T  25134166 actcattatagaaatgaatatattgataaaagatgatgaaagagtacaattgttgttcctatatctagagattagtt 25134242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 39787168 - 39787220
Alignment:
Q  34 aaaagatattgaatgagtacaatcgtattcctatatatagagattagtttgag 86  Q
    |||||| | |||||||||| ||| || ||||||||||||||||||||||||||    
T  39787168 aaaagacagtgaatgagtaaaatagtgttcctatatatagagattagtttgag 39787220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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