View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-23 (Length: 329)
Name: NF1614-Insertion-23
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-23 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 329
Target Start/End: Original strand, 32447489 - 32447811
Alignment:
| Q |
7 |
aatgagtcctccaatagttctttatctcattgtctgttcttcccggcaagcttctcgcaattgttgaccacctgaattgttttatatttagtaataatca |
106 |
Q |
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| T |
32447489 |
aatgagtcctccaatagttctttatctcattgtctgttcttcccggcaagcttctcgcaattgttgaccacctgaattgttttatatttagtaataatca |
32447588 |
T |
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| Q |
107 |
actagaagcattaacccgtgtcgcaacgcaacacgggtctggataaagtgtcacgtgtctaatacaagaaacatgtaagttcaagggacatagttcaaat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32447589 |
actagaagcattaacccgtgtcgcaacgcaacacgggtctggataaagtgtcacgtgtctaatacaagaaacatgtaagttcaagggacatggttcaaat |
32447688 |
T |
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| Q |
207 |
ttgtacctgtttccccacctagcatgtagctctaggattatgctttcttcttgttgtgttatctgacccttcttgaggtctggtcttaggtagttcaccc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32447689 |
ttgtacctgtttccccacctagcatgtagctctaggattatgctttcttcttgttgtgttatctgacccttcttgaggtctggtcttaggtagttcaccc |
32447788 |
T |
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| Q |
307 |
atctcaatctacaacttttccca |
329 |
Q |
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| T |
32447789 |
atctcaatctacaacttttccca |
32447811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 210 - 322
Target Start/End: Original strand, 17118580 - 17118692
Alignment:
| Q |
210 |
tacctgtttccccacctagcatgtagctctaggattatgctttcttcttgttgtgttatctgacccttcttgaggtctggtcttaggtagttcacccatc |
309 |
Q |
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| T |
17118580 |
tacctgtttccccacctagcatgaagctctaatattatgctttcttcttgtggtgttatttgaccccttttgagatctggtcttagataattcacccacc |
17118679 |
T |
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| Q |
310 |
tcaatctacaact |
322 |
Q |
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| T |
17118680 |
tcaatctgcaact |
17118692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 17118238 - 17118313
Alignment:
| Q |
7 |
aatgagtcctccaatagttctttatctcattgtctgttcttcccggcaagcttctcgcaattgttgaccacctgaa |
82 |
Q |
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||||||||||||| || |||||||| ||||||||||||||||| || || ||||| |||||||||||||||||||| |
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| T |
17118238 |
aatgagtcctccagtaattctttatttcattgtctgttcttcctggtaaacttcttgcaattgttgaccacctgaa |
17118313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 27632572 - 27632614
Alignment:
| Q |
7 |
aatgagtcctccaatagttctttatctcattgtctgttcttcc |
49 |
Q |
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| T |
27632572 |
aatgagttctccaatagttcttgatttcattgtctgttcttcc |
27632614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 49848562 - 49848596
Alignment:
| Q |
15 |
ctccaatagttctttatctcattgtctgttcttcc |
49 |
Q |
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| T |
49848562 |
ctccaatagttctttatctcattatctgttcttcc |
49848596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 38720109 - 38720072
Alignment:
| Q |
15 |
ctccaatagttctttatctcattgtctgttcttcccgg |
52 |
Q |
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| T |
38720109 |
ctccaatagttctttatttcattgtcggttcttcccgg |
38720072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 45594290 - 45594323
Alignment:
| Q |
16 |
tccaatagttctttatctcattgtctgttcttcc |
49 |
Q |
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| T |
45594290 |
tccaatagttcttaatctcattgtctgttcttcc |
45594323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 39916942 - 39916903
Alignment:
| Q |
16 |
tccaatagttctttatctcattgtctgttcttcccggcaa |
55 |
Q |
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| T |
39916942 |
tccaatagttcttgatctcattgtctgttcttccgggcaa |
39916903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 28944895 - 28944928
Alignment:
| Q |
16 |
tccaatagttctttatctcattgtctgttcttcc |
49 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
28944895 |
tccaaaagttctttatctcattgtctgttcttcc |
28944928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 13297848 - 13297808
Alignment:
| Q |
12 |
gtcctccaatagttctttatctcattgtctgttcttcccgg |
52 |
Q |
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| T |
13297848 |
gtcctccagtagttctttatctcattatcggttcttcccgg |
13297808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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