View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-24 (Length: 188)
Name: NF1614-Insertion-24
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-24 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 27096694 - 27096874
Alignment:
| Q |
8 |
gcctcaacctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaatccacaactt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27096694 |
gcctcaacctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaatccaacactt |
27096793 |
T |
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| Q |
108 |
ccatcactcaactttccaccattgccatccaattcacttcccaacattccttcaatctcaaccattatctcctccatccct |
188 |
Q |
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| T |
27096794 |
ccatctctcaactttccaccatttccatccaattcacttcccaacattccttcaatctcaaccattatctcctccatccct |
27096874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 27102997 - 27103177
Alignment:
| Q |
8 |
gcctcaacctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaatccacaactt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
27102997 |
gcctcaacctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaatccaacactt |
27103096 |
T |
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| Q |
108 |
ccatcactcaactttccaccattgccatccaattcacttcccaacattccttcaatctcaaccattatctcctccatccct |
188 |
Q |
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| T |
27103097 |
ccatctctcaactttccaccatttccatccaattcacttcccaaccttccttcaatctcaaccattatctcctccatccct |
27103177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 37187815 - 37187653
Alignment:
| Q |
15 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccacaacttccat |
111 |
Q |
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| T |
37187815 |
cctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaaattttccaacaattccat |
37187716 |
T |
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| Q |
112 |
cactcaactttccaccattgc---catccaattcacttcccaacattccttcaatctcaacca |
171 |
Q |
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| T |
37187715 |
ctctcaacattccaccattgccagcagccacttcacttcccaacattccttcaatcccaacca |
37187653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 37189722 - 37189900
Alignment:
| Q |
15 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccacaacttccat |
111 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || |||| | |||||| |
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| T |
37189722 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
37189821 |
T |
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| Q |
112 |
cactcaactttccaccattgccatc---caattcacttcccaacattccttcaatctcaaccattatctcctccatccc |
187 |
Q |
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| T |
37189822 |
ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccatccc |
37189900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 37180132 - 37179957
Alignment:
| Q |
15 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccacaacttccat |
111 |
Q |
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| T |
37180132 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
37180033 |
T |
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| Q |
112 |
cactcaactttccaccattgccatc---caattcacttcccaacattccttcaatctcaaccattatctcctccat |
184 |
Q |
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| T |
37180032 |
ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccat |
37179957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 37181605 - 37181767
Alignment:
| Q |
15 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccacaacttccat |
111 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || |||| | |||||| |
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| T |
37181605 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
37181704 |
T |
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| Q |
112 |
cactcaactttccaccattgccatc---caattcacttcccaacattccttcaatctcaacca |
171 |
Q |
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| T |
37181705 |
ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaacca |
37181767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 38704189 - 38704157
Alignment:
| Q |
67 |
ctatgccaccacttcctagcattcctaccaatc |
99 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
38704189 |
ctatgccaccacttcctagctttcctaccaatc |
38704157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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