View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-3 (Length: 952)
Name: NF1614-Insertion-3
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 541 - 873
Target Start/End: Complemental strand, 12560042 - 12559709
Alignment:
| Q |
541 |
tatcaacaaaattgatcaataattgtcatcaaataaaattgttaccaaaaagaaaatacaatgttcccgcgttttccgtactcaactccaaaatattatt |
640 |
Q |
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| T |
12560042 |
tatcaataaaattgatcaataattctcatcaaataaaattgttacgaaaaagaaagtacaatgttcccgcgttttccgtactcaactccaaaatattatt |
12559943 |
T |
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| Q |
641 |
tgtcnnnnnnncttcgtgcgtgcaagttatcgacaaatttcaacacacaaacatttcttcgtaactcgcaagtaacattttgtacagttgtactatgttg |
740 |
Q |
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| T |
12559942 |
tgtctttttt-cttcgtgcgtgcaagttatcgacaaatttcaacacacaaacatttcttcgtaactcgcaagtaacattttgtacagttgtactatgttg |
12559844 |
T |
|
| Q |
741 |
taacaactccattgttgtttttaagatcttatatatataagcatacccctctttc-aaccttgttgttttctctttacttcctcacatttctctttt-ct |
838 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| || |
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| T |
12559843 |
taacaactccattgttgtttttaagatcttatatatataagcatacccctctttcaaaccttgttgttttctctttactttct-acatttctcttttcct |
12559745 |
T |
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| Q |
839 |
gaaaaagtg-aaaatagtaacaaaatcgattatcac |
873 |
Q |
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| T |
12559744 |
gaaaaagtgaaaaatagtaacaaaatcgattatcac |
12559709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 12561257 - 12560927
Alignment:
| Q |
10 |
aaaaagatagatccctgattaattgcattattaatgatattgtttattttaagtgggaaatatccatcaaaatagatctagtaataatttttggnnnnnn |
109 |
Q |
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| T |
12561257 |
aaaaagatagatccctaattaattgcgttattaatgatattgtttattttaagtgggaaatatccatcaaaatagatctagtaataatttttggaaaaaa |
12561158 |
T |
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| Q |
110 |
nnnnnn-gattccttatatatccttttcatgttgaaacttgtcaaacaaaaatg-aaagaacattccctttttgttctcaaaagtcctaaagtggaagca |
207 |
Q |
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| T |
12561157 |
taaaaaagattccttatatatccttttcatgttgaaacttgtcaaacaaaaatgaaaaaaacattccctttttgttctcaaaagtcctaaagtggaagca |
12561058 |
T |
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| Q |
208 |
tgtgctacgtattactctttgagcttaatctattcatccaagtccaaccatcaatcctttttccnnnnnnnnnnngttgttgttactaatcaatgctttg |
307 |
Q |
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| T |
12561057 |
tgtgctaccta-----ctttgagcttaatctattcatccaagtccaaccaacaatcctttttccttttttttgt--tagttgttactaatcaatgctttg |
12560965 |
T |
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| Q |
308 |
cgcgttaagctctaatgcactttcacaaaattgattta |
345 |
Q |
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| T |
12560964 |
cgcgttaagctctaatgcactttcacaaaattgattta |
12560927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 418 - 517
Target Start/End: Complemental strand, 12560251 - 12560147
Alignment:
| Q |
418 |
atatttaagattaattaaaacaaattttatataattatctattatcatctaaaataaaaccaaacacaccaacattacattt-----aatgaaactaaat |
512 |
Q |
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| T |
12560251 |
atatttaagattaattaaaacaaattttatataattatctattatcatctaaaataaaaccaaaaacaccaacattacatttatccgaatgaaactaaat |
12560152 |
T |
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| Q |
513 |
ttaaa |
517 |
Q |
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||||| |
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| T |
12560151 |
ttaaa |
12560147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 12560861 - 12560818
Alignment:
| Q |
343 |
ttaacttattttagtcttaaaaattgcactagtattcaaagcat |
386 |
Q |
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| T |
12560861 |
ttaacttattttagtctaaaaaattgcactagtattcaaagcat |
12560818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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