View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614-Insertion-4 (Length: 855)

Name: NF1614-Insertion-4
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614-Insertion-4
NF1614-Insertion-4
[»] chr1 (2 HSPs)
chr1 (8-855)||(7086361-7087207)
chr1 (718-852)||(7666841-7666974)


Alignment Details
Target: chr1 (Bit Score: 771; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 8 - 855
Target Start/End: Original strand, 7086361 - 7087207
Alignment:
Q  8 agaatcccttcctggctatcaggaacacctgaatcaatgtctcgtcgtccgaaagacgcatcaaaaccaattactcgttcagacacaaatgttcccattc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7086361 agaatcccttcctggctatcaggaacacctgaatcaatgtctcgtcgtccgaaagacgcatcaaaaccaattactcgttcagacacaaatgttcccattc 7086460  T
Q  108 aaagaccatctaggccttctctcataacccctgcagaattttctcctagtcctaccaaaactcaagaagccgctacaattgaacctcaaaaccattcacc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7086461 aaagaccatctaggccttctctcataacccctgcagaattttctcctagtcctaccaaaactcaagaagccgctacaattgaacctcaaaaccattcacc 7086560  T
Q  208 gcctcatccaactcagccaacaccattatcatcgtcggtgtttgttgaaaccactcactcaaaaccacaatctccatcaacatcgccaaaccatgtcaac 307  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7086561 gcctcatccaagtcagccaacaccattatcatcgtcggtgtttgttgaaaccactcactcaaaaccacaatctccatcaacatcgccaaaccatgtcaac 7086660  T
Q  308 tctccaccaccatcatctcatgcggcatctcaggttcatgttgcctcaactcaacctcagtctccctctcatcatgacaccatgaaggtgccaaagccaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7086661 tctccaccaccatcatctcatgcggcatctcaggttcatgttgcctcaactcaacctcagtctccctctcatcatgacaccatgaaggtgccaaagccaa 7086760  T
Q  408 attcttcatctgtggaagaaagcactcatcctacatcaccccgagtttctaaaattgagccagcttctcagcatcacccaccatcgcctttggccccaga 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7086761 attcttcatctgtggaagaaagcactcatcctacatcaccccgagtttctaaaattgagccagcttctcagcatcacccaccatcgcctttggccccaga 7086860  T
Q  508 gnnnnnnnntgagcatcatctaccatctccttcggatatagagcaaataaatgagcatcatctaccatctccttcggatattgagcgaaaaaatgagcat 607  Q
    |        ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7086861 gaaaaaaaatgagcatcatctaccatctccttcggatatagagcgaaaaaatgagcatcatctaccatctccttcggatattgagcgaaaaaatgagcat 7086960  T
Q  608 cattcaccatctccttggacttggaccctggagcnnnnnnntgaggtgttaaaggctaaccatgaagaaaacactcggcatacatcatctacctcacaag 707  Q
    ||| |||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7086961 catccaccatctccttggacttggaccccggagcaaaaaaatgaggtgttaaaggctaaccatgaagaaaacactcggcatacatcatctacctcacaag 7087060  T
Q  708 aagaaaaagggaagatgtcagtgtctgatccggttccaagtgaagcggaacccaaagacgaagtcaccatcgaaaatcatccccgtgtcacaaccagaga 807  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7087061 aagaaaaagggaagatgtcagtgtctgatccggttccaagtgaaccggaa-ccaaagacgaagtcaccatcgaaaatcatccccgtgtcacaaccagaga 7087159  T
Q  808 atctttctaagcacacaaaaacaaaactagatgaggaaatatcaacat 855  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7087160 atctttctaagcacacaaaaacaaaactagatgaggaaatatcaacat 7087207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 718 - 852
Target Start/End: Original strand, 7666841 - 7666974
Alignment:
Q  718 gaagatgtcagtgtctgatccggttccaagtgaagcggaacccaaagacgaagtcaccatcgaaaatcatccccgtgtcacaaccagagaatctttctaa 817  Q
    |||||||||||| ||||||||  ||||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  7666841 gaagatgtcagtttctgatccaattccaagtgaagcggaacc-aaagatgaagtctccgtcgaaaatcatccccgtgtcacaaccagagaatctttctaa 7666939  T
Q  818 gcacacaaaaacaaaactagatgaggaaatatcaa 852  Q
    ||||||||| |||||| ||||||||||||||||||    
T  7666940 gcacacaaagacaaaattagatgaggaaatatcaa 7666974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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