View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-5 (Length: 851)
Name: NF1614-Insertion-5
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-5 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 807; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 9 - 851
Target Start/End: Complemental strand, 3572907 - 3572065
Alignment:
| Q |
9 |
gtttcacttgacagcaccttacaaattgttgattgtaatgttattgttttgactctgctttattcagatgtttcattcatgaaggaggaaacgaataaga |
108 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3572907 |
gtttcacttcacagcgccttacaaattgttgattgtaatgttattgttttgactctgctttattcagatgtttcattcatgaaggaggaaaagaataaga |
3572808 |
T |
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| Q |
109 |
tgttagagatattacaaaagatagaaggtgaaaggaaaatcgaaaagcaaaatcaattgttctgattttgattacatgtatgcataaaggactaatcctc |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572807 |
tgttagggatattacaaaagatagaaggtgaaaggaaaattgaaaagcaaaatcaattgttctgattttgattacatgtatgcataaaggactaatcctc |
3572708 |
T |
|
| Q |
209 |
ctgcctaaatagttaatttatgttgttgataaaaaggaaatgagtgttgctggattaagagttgaaggcaaacaacatggggggatgtgagttaatggga |
308 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3572707 |
ctgcccaaatagttaatttatgttgttgataaaaaggaaatgagtgtttctggattaagagttgaaggcaaacaacatggagggatgtgagttaatggga |
3572608 |
T |
|
| Q |
309 |
aagaacttgttaaaggttgatcaattgcttatggagttactatcatggaattcgttttgatgctgtcaaagtaaaagaattggttacaataaactggctt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572607 |
aagaacttgttaaaggttgatcaattgcttatggagttactatcatggaattcgttttgatgctgtcaaagtaaaagaattggttacaataaactggctt |
3572508 |
T |
|
| Q |
409 |
atcaccaataatttgattttgtaagcttaaattaaattgtgaaatcttgttatataactctcagttttggcattttgaagtgaatactctttatggcatt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572507 |
atcaccaataatttgattttgtaagcttaaattaaattgtgaaatcttgttatataactctcagttttggcattttgaagtgaatactctttatggcatt |
3572408 |
T |
|
| Q |
509 |
ttgaagttccctgtatcagcaattcaccatatgttacattattttccaggaatgaaacaagtgtctggttcaatattactctacatggcttaactgctgg |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572407 |
ttgaagttccctgtatcagcaattcaccatatgttacattattttccaggaatgaaacaagtgtctggttcaatattactctacatggcttaactgctgg |
3572308 |
T |
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| Q |
609 |
actcacatcgcattcattcacaaggaaatatagtgatgacattcgagactgataagtaaatcgaaagattgaaaaacgacaacaaaatgaagatgaaact |
708 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572307 |
actcacatcgcattcattcacaaggaaatttagtgatgacattcgagactgataagtaaatcgaaagattgaaaaacgacaacaaaatgaagatgaaact |
3572208 |
T |
|
| Q |
709 |
attcatcgataccttcccgtgtatccaaaagtaattcacaagagaattcatgcaaaggcgaaagaacatgttggtccattatccccctgcagatgtcatg |
808 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572207 |
attcatcgataccttcccgtgtatccaaaagtaattcacaagagaattcatgcaaaggcgaaagaacatgttggtccattatccccctgcagatgtcatg |
3572108 |
T |
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| Q |
809 |
taaatgtatcagtgattggagcgtgctcaactgtatttcatcg |
851 |
Q |
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| T |
3572107 |
taaatgtatcagtgattggagcgtgctcaactgtatttcatcg |
3572065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 3570807 - 3570647
Alignment:
| Q |
71 |
ttcagatgtttcattcatgaaggaggaaacgaataagatgttagagatattacaaaagatagaaggtgaaaggaaaatcgaaaagcaaaatcaattgttc |
170 |
Q |
| |
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||||||||||||| ||||| |||||||| |||||||||||| ||||||||||| |||||||||||||||| |||||| ||||||||| |||| |||||| |
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| T |
3570807 |
ttcagatgtttcactcatggcggaggaaaagaataagatgttggagatattacacaagatagaaggtgaaatgaaaattgaaaagcaagatcagttgttc |
3570708 |
T |
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| Q |
171 |
tgattttgattacatgtatgcataaaggactaatcctcctgcctaaatagttaatttatgt |
231 |
Q |
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|| ||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
3570707 |
tgtttttgattacatgaatgcataaaggacttatcctcctgcctaaatagttaatatatgt |
3570647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 3560180 - 3560051
Alignment:
| Q |
78 |
gtttcattcatgaaggaggaaacgaataagatgttagagatattacaaaagatagaaggtgaaaggaaaatcgaaaagcaaaatcaattgttctgatttt |
177 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||| |||||| |||| |||||||||||| |||||| ||||| ||||||| ||||| | | || |||| |
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| T |
3560180 |
gtttcattcatggaggaggaaaagaataagatgttggagatactacacaagatagaaggtaaaaggacaatcgcaaagcaagatcaagggct-tgctttt |
3560082 |
T |
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| Q |
178 |
gattacatgtatgcataaaggactaatcctc |
208 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
3560081 |
gattacatgtatgcataaaggactaatcctc |
3560051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 1685512 - 1685424
Alignment:
| Q |
76 |
atgtttcattcatgaaggaggaaacgaataagatgttagagatattacaaaagatagaaggtgaaaggaaaatcgaaaagcaaaatcaa |
164 |
Q |
| |
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|||||||||||||| || ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
1685512 |
atgtttcattcatggagaaggaagagaataagatgttggagatattacacaagatagaaggtgaaaggaaaatcgaaaagcaagatcaa |
1685424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 3551138 - 3551030
Alignment:
| Q |
102 |
aataagatgttagagatattacaaaagatagaaggtgaaaggaaaatcgaaaagcaaaatcaattgttctgattttgattacatgtatgcataaaggact |
201 |
Q |
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||||| ||||| | ||||||||| | ||||||| |||||||||||||| |||||||| | || ||||||| ||||||||||||||||||||||||| | |
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| T |
3551138 |
aataaaatgttggggatattacacaggatagaaagtgaaaggaaaatccaaaagcaagaataactgttctgggtttgattacatgtatgcataaaggatt |
3551039 |
T |
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| Q |
202 |
aatcctcct |
210 |
Q |
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||||||||| |
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| T |
3551038 |
aatcctcct |
3551030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 3574212 - 3574150
Alignment:
| Q |
107 |
gatgttagagatattacaaaagatagaaggtgaaaggaaaatcgaaaagcaaaatcaattgtt |
169 |
Q |
| |
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|||||| ||||||||||| | ||||||||| ||| |||||||| ||||||| |||||||||| |
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| T |
3574212 |
gatgttggagatattacacaggatagaaggagaatggaaaatcctaaagcaagatcaattgtt |
3574150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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