View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-6 (Length: 845)
Name: NF1614-Insertion-6
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 734; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 8 - 845
Target Start/End: Original strand, 5291714 - 5292554
Alignment:
| Q |
8 |
ataaggtgctatgagttacattggtttcactaaataaaagaatgagcgttaaagatggtgttgtaaagagagtattgctaatattactcttatatgtttc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |
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| T |
5291714 |
ataaggtgctatgagttacattggtttcactaaataaaagaatgagcgttaaagatggtgttgtaaagagagtgttgcgaatattactcttatacgtttc |
5291813 |
T |
|
| Q |
108 |
attggtcgaaat-ttttaagtgttgttcaaatgttgcaaaatggctacaaagtgctatttgaaacataaaaattgtgtaattaaataacaaaatgcaatt |
206 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5291814 |
attggtcgaaatcttttaagtgttgttcaaatgttgcaaaatggctacaaagtgctatttgaaacataaaaattgtgtaattaaataacaaaatgcaatt |
5291913 |
T |
|
| Q |
207 |
ttttattcacgcatgctgcatcatcgttcgtgttcatcatcaacgagactcgttgtttgaccacttttgtcaagctggcattcgatacaagaagctaata |
306 |
Q |
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||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||| |||||||||||| |
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| T |
5291914 |
ttttatttacgcatgctgcatcgtcgttagtgttcatcatcaacgagacttgttgtttgaccacttttatcaagttgggattcgatataagaagctaata |
5292013 |
T |
|
| Q |
307 |
ctcttcatcaaaccatatactttgatgttgttgtttagtcaataggaaagttttatcaaattgcattaagagcaaacaaacaagtaaattggatatcata |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5292014 |
ctcttcatcaaaccatatactttgatgttgttgtttagttaataggaaagtctcatcaaattggattaagagcaaacaaacaagtaaattggatatcata |
5292113 |
T |
|
| Q |
407 |
ttttcaccgaaaacttataagacgttgcatatattaatatatatcttctctcttgtatgttgttcgatatccacttttctaactcacataaaccttctac |
506 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5292114 |
ttttcaccgaaaacttataagacgttacatatattaatatatatcctctctcttgtatgttgttcgatattcacttttctaactcacataaaccttctac |
5292213 |
T |
|
| Q |
507 |
ctcacacttgacatacaagaaaagtgagaaagagaggaggtgatagtaagatggaagacaaagaaatcatgagataaatggtatggtgtaggaaagaatc |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
5292214 |
ctcacacttgacatacaagaaaagtgagaaagagaggaggtgatagtaagatggaagacaaagaaatcacgagataaatggtatggtgtaggagagaatc |
5292313 |
T |
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| Q |
607 |
aagatttaaagt--taatgaacattacatgtaatgtgccactgccagtggaagtctactccacttggtgacatgagagtgtacatacaccccaacaagaa |
704 |
Q |
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| T |
5292314 |
aagatttaaagttataatgaacattacatgtaatgtgccactgccagtggaagtctactccacttggtgacatgagagtgtacatacaccccaacaagaa |
5292413 |
T |
|
| Q |
705 |
aactctcccatgtgaaatgaatgattttttgttcctctttttctcattactccattagctaccgtgtaacaaatcaaaccacatctcaaatgctgatagc |
804 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5292414 |
aactctcccatgtgaaatgaatgattttttgttcctctttttctcattaccccattacctaccgtgtaacaaatcaaaccacatctcaaatgctgatagc |
5292513 |
T |
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| Q |
805 |
gtgcctctatcttaaatgcgtgatgcaatttgtatcaacca |
845 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
5292514 |
gtgcctctatcttaaatgcgtgatgcaatttgtatcaacca |
5292554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 777 - 839
Target Start/End: Original strand, 4825771 - 4825833
Alignment:
| Q |
777 |
atcaaaccacatctcaaatgctgatagcgtgcctctatcttaaatgcgtgatgcaatttgtat |
839 |
Q |
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| T |
4825771 |
atcaaaccacatctcaaatgttgatagcgtgcctctatcttgaatgggtgatgcaatttgtat |
4825833 |
T |
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