View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614-Insertion-7 (Length: 812)
Name: NF1614-Insertion-7
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 6 - 809
Target Start/End: Complemental strand, 8164405 - 8163580
Alignment:
| Q |
6 |
cagctttgtgatcggcaacactattggaatatggttcatagtagtgagtaattaaggtaattccaatttttcctttttgatgagcctatggcaccaaaca |
105 |
Q |
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| T |
8164405 |
cagctttgtgatcggcaacactattggaatatggttcatagtagtgagtaattaaggtaattccaatttttcctttttgatgagcctatggcaccaaaca |
8164306 |
T |
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| Q |
106 |
aaaaatttatcaattgtata-taaaca-aagaattacactatacatttgtaatagcatatttttaaactatgaagcacgaatatagata----cagaca- |
198 |
Q |
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| T |
8164305 |
taaatttcatcaattgtataataaacagaagaattacactatacatttttaagagcatatttttaaaatgtgaagaacggatagggacaaccactgacat |
8164206 |
T |
|
| Q |
199 |
-ctgacatcgctaataatttttaaaa-taacatattttagtgttatcacatgtgtcagtg-----------tcagacattgacacatgtccgatctcaga |
285 |
Q |
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| T |
8164205 |
actgatatcactaataatttgaaaaaatcatgtattttagtgtaatcacatgtatcagtgatgtgtcagtttcagacactgtcgcatgtccgacaccaga |
8164106 |
T |
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| Q |
286 |
atacgcctaatccgaaatgatcgtctgtgcttaatagtttttaaataa----tgagactagctcacacatttgattgggtatatgcattttaaccgataa |
381 |
Q |
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| T |
8164105 |
gcacgcctaatttga--tgattgttcctgcttcatagtttttaaataaagaatgagactagctcacacatttgattaactatatgcatcttgactgataa |
8164008 |
T |
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| Q |
382 |
aattaagatcaatttacctgatatttagccttgtacaatttggctgcagcagcatgagcaagtataaagtgatgagcaacaatgtagggttctgtagttg |
481 |
Q |
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| T |
8164007 |
agtttagatcaaattacctgatatttggccttatacaatttggctgcagcagcatgagaaagtataaagtgatgagcaacaatgtagggttctgtagttg |
8163908 |
T |
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| Q |
482 |
agtcaccagtagagcaatttccaacatatttagagcatcttgcaggtggagaggtgcctccatggtatccattaatggtatatgaaacaggctcattaag |
581 |
Q |
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| T |
8163907 |
agtcaccagtagagcaatttccaacatatttagagcatcttgcaggtggagaagtgcctccatggtatccattaatggtgtaggaaacaggctcattaag |
8163808 |
T |
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| Q |
582 |
tgtcacccaatgcttaaccctatctccaaatgtcttgaagcaaaaatcagcataggcttcaaaatccttcctattttattcattaaattaaattaagaat |
681 |
Q |
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| T |
8163807 |
tgtcacccaatgcttaaccctatctccaaatgtcttgaagcaaaaatcagcataggcttcaaaatccttcctattttattcattaaattaaattaagaat |
8163708 |
T |
|
| Q |
682 |
aagtttatatactaacttttttgttgttacctttagaaaataatatatttataataggttacatttattttacttttgtaatagggtgttacttaagctt |
781 |
Q |
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| T |
8163707 |
aagtttatacactaacttttttgttgttacctttagaaaataatatatttataataggttacatttattttacttttgcaatagggtgttacttaagctt |
8163608 |
T |
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| Q |
782 |
acactactttaggactcagaaatccctt |
809 |
Q |
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| T |
8163607 |
acactattttaggacttagaaatccctt |
8163580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 395 - 703
Target Start/End: Complemental strand, 8140095 - 8139792
Alignment:
| Q |
395 |
ttacctgatatttagccttgtacaatttggctgcagcagcatgagcaagtataaagtgatgagcaacaatgtagggttctgtagttgagtcaccagtaga |
494 |
Q |
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| T |
8140095 |
ttacctgatattttctcttgtatactctgactgcagcagcatgagaaagtatcaagttatgagcaacaatgtagggctctgtacttgagtcaccagtagt |
8139996 |
T |
|
| Q |
495 |
gcaatttccaacatatttagagcatcttgcaggtggagaggtgcctccatggtatccattaatggtatatgaaacaggctcattaagtgtcacccaatgc |
594 |
Q |
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| T |
8139995 |
gcaatttgcaacatatttagaacatctaccaggtgcaaaagtaccaccattatatccattgatggtgtatgaataaggttcattaagtgtcacccaatgc |
8139896 |
T |
|
| Q |
595 |
ttaaccctatctccaaatgtcttgaagcaaaaatcagcataggcttcaaaatccttcctattttattcattaaattaaattaagaataagtttatatact |
694 |
Q |
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| T |
8139895 |
ttaaccctatctccaaatgtcttgaagcaaaagtcagcatagactgcgaaatccttcctgttttatccattaaa-----ttaagaataagtttatatatt |
8139801 |
T |
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| Q |
695 |
aactttttt |
703 |
Q |
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| T |
8139800 |
aaccttttt |
8139792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 8140720 - 8140635
Alignment:
| Q |
20 |
gcaacactattggaatatggttcatagtagtgagtaattaaggtaattccaatttttcctttttgatgagcctatggcaccaaaca |
105 |
Q |
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|||||||||||||||||||||||| || ||||||| | |||||| | ||||||||||||||||||||||||||||| ||||||||| |
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| T |
8140720 |
gcaacactattggaatatggttcaaagaagtgagtcactaaggtcactccaatttttcctttttgatgagcctatgacaccaaaca |
8140635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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