View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614-Insertion-8 (Length: 790)
Name: NF1614-Insertion-8
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614-Insertion-8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 285 - 573
Target Start/End: Complemental strand, 28905532 - 28905246
Alignment:
| Q |
285 |
ggaagagattgctgaagattattgctttgtttgcaaagatggtggtgaaatgagagtctgtgattttgggtattttctttaagttcttctcatacttcat |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28905532 |
ggaagagattgctgaagattattgctttgtttgcaaagatggtggtgaaatgagagtctgtgattttgggtattttctttaagttcttctcatacttcat |
28905433 |
T |
|
| Q |
385 |
tcattcattgcatgattatacatttctatcatgaatgatgaaactgannnnnnnnnnnnnnnnagatttcattctaaagtaaaaaatcagttacagaatt |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
28905432 |
tcattcattgcatgattatacatttctatcatgaatgatgaaactgattttgttttttattttagatttcattctaaaataaaaaatcagtttcagaatt |
28905333 |
T |
|
| Q |
485 |
ttgactagattttactctgtatgtggtctcagctcaagattttcaccaactttgggttttgatgctcattttcatgcttatatatttct |
573 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28905332 |
ttgactagattttactctgtatgtggtct--gctcaagattttcaccaactttgggttttgatgctcattttcatgcttatatatttct |
28905246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 28905810 - 28905566
Alignment:
| Q |
7 |
acattttcctttcatcttctctcattttttcattcgttcaacttacactgnnnnnnnnnnnnnnnnnnnngtactagtttcttagctttacgattttgtt |
106 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28905810 |
acattttcctctcttcttctctcattttttcattcgttcaacttacactgtaataataataaataataatgtactagtttcttagctttacgattttgtt |
28905711 |
T |
|
| Q |
107 |
tcattctgtaaaatccaacattcacattttctgtaatttcgcttttctttagctactactactcttcatcaacctacttgagttgaagcttttataaaag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28905710 |
tcattctgtaaaatccaacattcacattttctgtaatttcgcttttcttcagctactactactcttcatcaacctacttgagttgaagcttttataaaaa |
28905611 |
T |
|
| Q |
207 |
gctcttatttttatttcttacccccctttctttcttctccagaac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28905610 |
gctcttatttttatttcttacccccctttctttcttctccagaac |
28905566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 602 - 790
Target Start/End: Complemental strand, 28905217 - 28905033
Alignment:
| Q |
602 |
agtaactttatcctagttataaagcctgannnnnnnnccggatgttcataatcatgtttgctgttgcatgagtatgtgtggtttttagggataatctccc |
701 |
Q |
| |
|
||||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28905217 |
agtaactttatcctagttataaagcctaattttttttccagatgttcataatcatgtttgttgttgcatgagtatgtgtggtttttagggataatct-cc |
28905119 |
T |
|
| Q |
702 |
tacaatacttgctttactaaagggcagccccgttaccactaaagttcccacttacgcagggtcccggaaaggggtcccatatttggtgt |
790 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
28905118 |
tacaatacttgctttactaaagggcag-cccgtta-cactaaagttcccgcttacgcagggtccgggaaa-gggtcccatatttggtgt |
28905033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 28895146 - 28895075
Alignment:
| Q |
285 |
ggaagagattgctgaagattattgctttgtttgcaaagatggtggtgaaatgagagtctgtgattttgggta |
356 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||||||||| |||||| ||||||||||| |||| |
|
|
| T |
28895146 |
ggaagagattgctgaaagtttttgctttatttgcaaagatggtggtgacatgagaatctgtgattttaggta |
28895075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 28938861 - 28938807
Alignment:
| Q |
296 |
ctgaagattattgctttgtttgcaaagatggtggtgaaatgagagtctgtgattt |
350 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| |||||||||||||||| |
|
|
| T |
28938861 |
ctgaagattattgctttttctgcaaagatggtggtgaattgagagtctgtgattt |
28938807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 28928288 - 28928223
Alignment:
| Q |
285 |
ggaagagattgctgaagattattgctttgtttgcaaagatggtggtgaaatgagagtctgtgattt |
350 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
28928288 |
ggaagagatcgctgaagaatggtgctttgtttgcaaagatggtggtgaactgagagtatgtgattt |
28928223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 28918537 - 28918473
Alignment:
| Q |
285 |
ggaagagattgctgaagattattgctttgtttgcaaagatggtggtgaaatgagagtctgtgatt |
349 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||||||||||||| ||||||| |||||||||| |
|
|
| T |
28918537 |
ggaagagattgctgaaggttgttgcttttcttgcaaagatggtggtcaaatgagggtctgtgatt |
28918473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 28938959 - 28938911
Alignment:
| Q |
181 |
tacttgagttgaagcttttataaaaggctcttatttttatttcttaccc |
229 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
28938959 |
tacttgagttgaagcttttttaaaaacctctcatttttatttcttaccc |
28938911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University