View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614-Insertion-9 (Length: 697)

Name: NF1614-Insertion-9
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614-Insertion-9
NF1614-Insertion-9
[»] chr1 (1 HSPs)
chr1 (5-697)||(1718348-1719039)
[»] chr3 (12 HSPs)
chr3 (165-601)||(26648411-26648847)
chr3 (390-623)||(20006865-20007089)
chr3 (378-554)||(26654458-26654634)
chr3 (404-682)||(20014808-20015086)
chr3 (389-513)||(20033036-20033160)
chr3 (390-623)||(17115339-17115565)
chr3 (415-559)||(19952483-19952627)
chr3 (386-513)||(20032897-20033022)
chr3 (215-357)||(20047353-20047496)
chr3 (471-535)||(19990584-19990648)
chr3 (211-310)||(20014618-20014715)
chr3 (33-93)||(26648878-26648938)
[»] chr5 (5 HSPs)
chr5 (165-682)||(26353295-26353815)
chr5 (376-653)||(9816296-9816573)
chr5 (49-93)||(26353187-26353231)
chr5 (104-153)||(9816859-9816908)
chr5 (6-35)||(26353080-26353109)
[»] chr8 (2 HSPs)
chr8 (104-168)||(28943913-28943977)
chr8 (99-168)||(22654864-22654933)


Alignment Details
Target: chr1 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 5 - 697
Target Start/End: Complemental strand, 1719039 - 1718348
Alignment:
Q  5 acagaaagaaattgacagcagaggatctagaaataagagctatgttaacttactcatgatgaaattaggaaagagttatgcttcacttccgttacaaaat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1719039 acagaaagaaattgacagcagaggatctagaaataagagctatgttaacttactcatgatgaaattaggaaagagttatgcttcacttccgttacaaaat 1718940  T
Q  105 tgctaagattagattcacttcatgattttgttttctgcacttcattatatgttctttatcacatagcaaaatgtcttagtcatgcaaatcctacttatag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718939 tgctaagattagattcacttcatgattttgttttctgcacttcattatatgttctttatcacatagcaaaatgtcttagtcatgcaaatcctacttatag 1718840  T
Q  205 ataaataataacacaagcatatcagttaataaaaatttatacatcacaactcattaaaactaataatactttctccttcatttgttgtcaacaaaatgca 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| |    
T  1718839 ataaataataacacaagcatatcagttaataaaaatttatacatcataactcattaaaactaatattactttctccttcatttgttatcaacaaaatgaa 1718740  T
Q  305 gagtataaaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaaannnnnnnnaaggaagaaacgatgatggctgttgattcctcaaaaca 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  1718739 gagtataaaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaaa-attttttaaggaagaaacgatgatggctgttgattcctcaaaaca 1718641  T
Q  405 ctagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctctt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1718640 ctagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaacatctcttcctgttgtcttgccagacgtgcgagctcctctt 1718541  T
Q  505 gattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagcagc 604  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1718540 gattcttcatgcattcctcttttaacaaaaccataacttcatcatctcttgcttccctttctttttcttcagctgtttctttagcgtctgcttgagcagc 1718441  T
Q  605 catatccgagtgaaactgagaatattgctgcgcagcagttacattgttgttcggagcaacttcttttctgatagaaaagtttttgcatcttgc 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  1718440 catatccgagtgaaactgagaatattgctgcgcagcagttacattgttgttcggagtaactttttttctgatagaaaagtttttgcatcttgc 1718348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 5e-67; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 165 - 601
Target Start/End: Complemental strand, 26648847 - 26648411
Alignment:
Q  165 acatagcaaaatgtcttagtcatgcaaatcctacttatagataaataataacacaagcatatcagttaataaaaatttatacatcacaactcattaaaac 264  Q
    ||||||||||||||  ||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||  |||| |||| |||||||||||||    
T  26648847 acatagcaaaatgtgctagtcatgccaatgctacttatagataaataataacacaggcatatcagttgataaaaa--tatatatcataactcattaaaac 26648750  T
Q  265 taataatactttctccttcatttgttgtcaacaaaatgcagagtat-aaaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaaa--nnn 361  Q
    ||||| ||||||||||||| |||||| ||||| ||||| | ||||| |||||||||  | ||||||||||||||  | || || |||||||||||         
T  26648749 taatactactttctccttcctttgttatcaac-aaatggacagtatgaaaagagcactactgtcatgagtttcaggaggagaattcaaaaacaaattaaa 26648651  T
Q  362 nnnnnaaggaagaaacgatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgt 461  Q
         ||| || | | |||| ||| ||||||||| | | |||||||||||| ||||||||||||||||||||| ||||||||  |||| | |||||| |     
T  26648650 gttttaagaaaaagatgatggtggttgttgattctttagaacactagtgaggagttgcctcaactcttcatccctcttctccttcaaatctattaactga 26648551  T
Q  462 aatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttccc 561  Q
    || |||| ||| |||||||||||||| ||   ||| |||||||| ||||||| | ||  | ||||||||||||||| |||||||| ||| ||| ||| ||    
T  26648550 aacatcttttcttgttgtcttgccaggcgcctgagttcctcttggttcttcaagtatagctcttttaacaaaaccacaacttcatgatcactttctttcc 26648451  T
Q  562 ttcctttttcttcagctgtttctttagcgtctgcttgagc 601  Q
    |||||||||||||| | | ||||||||| | |||||||||    
T  26648450 ttcctttttcttcaaccgcttctttagcttgtgcttgagc 26648411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 390 - 623
Target Start/End: Original strand, 20006865 - 20007089
Alignment:
Q  390 tgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagac 489  Q
    |||||||| | ||||||||| || || || ||||||||||||||| |||||||||||||| |||||| |  ||| ||||| || |||||||||||||||     
T  20006865 tgattccttagaacactagtaaggaggtgtctcaactcttcatccctcttctcccacaaagccattacctctaacatctcctcttgttgtcttgccagat 20006964  T
Q  490 gtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagc 589  Q
    | | ||| |||||||||||||||| | ||| | |||||||||||||||||| || ||         ||||  || ||||||||||| | |||||||||||    
T  20006965 gcgtgagttcctcttgattcttcaagtattgctcttttaacaaaaccataagtttat---------cttcattttctttttcttcaaccgtttctttagc 20007055  T
Q  590 gtctgcttgagcagccatatccgagtgaaactga 623  Q
     |||||||||||||||||||| ||||||||||||    
T  20007056 ttctgcttgagcagccatatcagagtgaaactga 20007089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 378 - 554
Target Start/End: Complemental strand, 26654634 - 26654458
Alignment:
Q  378 gatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgtt 477  Q
    |||| ||| ||||||||||| | |||||||||||| ||||||||||||||||||||  | ||||||| |||| ||||||| ||||| |||||||| ||||    
T  26654634 gatggtggttgttgattccttagaacactagtgagaagttgcctcaactcttcatctcttttctccctcaaatccattaaacgtaacatctcttcttgtt 26654535  T
Q  478 gtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctctt 554  Q
    ||||||| |||||||| |  |||||||||||||||| ||  | | |||| || |||| || ||||||||||||||||    
T  26654534 gtcttgctagacgtgccatttcctcttgattcttcaagctatgctctttcaataaaatcacaacttcatcatctctt 26654458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 404 - 682
Target Start/End: Original strand, 20014808 - 20015086
Alignment:
Q  404 actagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctct 503  Q
    ||||||||| ||||| ||||||||||||||| |||||  |  |||| |||||| |||||| ||||| || ||||||||||||||| |   ||| ||||||    
T  20014808 actagtgagaagttgtctcaactcttcatccctcttcatcttcaaatccattagccgtaacatctcatcttgttgtcttgccagaagcctgagttcctct 20014907  T
Q  504 tgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagcgtctgcttgagcag 603  Q
    |||||||||| | ||| | ||||||| ||||||| | |||||| ||| ||| |||  |||| |||| ||||| ||  ||||||||  | |||||||| ||    
T  20014908 tgattcttcaagtattgctcttttaagaaaaccaaagcttcatgatcactttcttttcttctttttacttcaacttcttctttagattgtgcttgagtag 20015007  T
Q  604 ccatatccgagtgaaactgagaatattgctgcgcagcagttacattgttgttcggagcaacttcttttctgatagaaaa 682  Q
      ||| |  |||||||||||  || || ||||||| |||  |||||||||  |  ||  |||| |||||||||||||||    
T  20015008 aaataccatagtgaaactgaagatttttctgcgcaacagccacattgttggacaaagagactttttttctgatagaaaa 20015086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 20033036 - 20033160
Alignment:
Q  389 ttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccaga 488  Q
    ||||||||| |  |||||||| || ||||||||||||||||||||  ||||||||| |||| ||| |||||| || |||||||||||||| | | | | |    
T  20033036 ttgattccttaggacactagtaaggagttgcctcaactcttcatctctcttctccctcaaagccaataaccgcaagatctcttcctgttggcgtactaca 20033135  T
Q  489 cgtgcgagctcctcttgattcttca 513  Q
    |||||||| ||| ||||||||||||    
T  20033136 cgtgcgagttccccttgattcttca 20033160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 390 - 623
Target Start/End: Complemental strand, 17115565 - 17115339
Alignment:
Q  390 tgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagac 489  Q
    |||||||| | |||||||||||| |||||| |    |||||| || |||||||   |||| |||||||| | || ||| |||| ||||||||||||||||    
T  17115565 tgattccttagaacactagtgaggagttgcat----tcttcacccctcttctctttcaaagccattaactgaaacatcacttcatgttgtcttgccagac 17115470  T
Q  490 gtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttcagctgtttctttagc 589  Q
    |   ||| || ||||||||||||| | ||| | |||||| || ||||| |  ||||| ||| ||| ||   ||||||||  ||||| |||||||  ||||    
T  17115469 gcctgagttcgtcttgattcttcaagtattgctcttttagcagaaccacattttcatgatcactttct---cttcctttcccttcaactgtttccatagc 17115373  T
Q  590 gtctgcttgagcagccatatccgagtgaaactga 623  Q
     ||||||| |||||||||||| ||||||||||||    
T  17115372 ttctgctttagcagccatatcggagtgaaactga 17115339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 415 - 559
Target Start/End: Complemental strand, 19952627 - 19952483
Alignment:
Q  415 gttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcat 514  Q
    ||||||||||||||||||| ||||| |||| |||| ||||||||||||| ||||| ||||| |||||| |||  || || || || |||||| ||||||     
T  19952627 gttgcctcaactcttcatctttcttttccctcaaagccattaaccgtaagatctcctcctgctgtcttcccaagcgcgctagttcttcttgaatcttcaa 19952528  T
Q  515 gcattccacttttaacaaaaccataacttcatcatctcttgcttc 559  Q
    | |||   ||||| |||||||||  ||||||| ||| ||| ||||    
T  19952527 gtattggtcttttgacaaaaccacgacttcatgatccctttcttc 19952483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 386 - 513
Target Start/End: Original strand, 20032897 - 20033022
Alignment:
Q  386 ctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctgttgtcttgcc 485  Q
    |||||||||||| | ||||||||  || | ||||||||||||||||||| ||||||||| ||||  || ||| || || ||||||||||||||||||||     
T  20032897 ctgttgattccttagaacactag--aggatttgcctcaactcttcatccctcttctccctcaaagacaataatcgcaagatctcttcctgttgtcttgct 20032994  T
Q  486 agacgtgcgagctcctcttgattcttca 513  Q
    | | |   ||| ||||||||||||||||    
T  20032995 acatgcttgagttcctcttgattcttca 20033022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 215 - 357
Target Start/End: Complemental strand, 20047496 - 20047353
Alignment:
Q  215 acacaagcatatcagttaataaaaatttatacatcacaactcattaaaactaataatac--tttctccttcatttgttgtcaacaaaatgcagagtat-a 311  Q
    |||||| ||||||||||||||||||| ||||   || ||||||| |||||||||  ||   ||| ||||||||||||| ||||||||||  ||||||| |    
T  20047496 acacaatcatatcagttaataaaaatatatag--cataactcatcaaaactaatcttaaaatttatccttcatttgttatcaacaaaatagagagtatga 20047399  T
Q  312 aaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaa 357  Q
    |||||| |||| |||||| ||||| || || |||| ||||||||||    
T  20047398 aaagagaatcactgtcataagtttgatgaacaaaattcaaaaacaa 20047353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 535
Target Start/End: Complemental strand, 19990648 - 19990584
Alignment:
Q  471 tcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaac 535  Q
    ||||||| |||||||||||||| ||| |||||||||||||||| | ||| | ||||||| |||||    
T  19990648 tcctgttctcttgccagacgtgtgagttcctcttgattcttcaagtatttctcttttaagaaaac 19990584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 310
Target Start/End: Original strand, 20014618 - 20014715
Alignment:
Q  211 aataacacaagcatatcagttaataaaaatttatacatcacaactcattaaaactaataatactttctccttcatttgttgtcaacaaaatgcagagtat 310  Q
    |||||| ||| ||||||||||||||||||  ||||  ||| ||||||| ||| ||| || ||||| | ||||||||| || ||||||||||| |||||||    
T  20014618 aataacccaatcatatcagttaataaaaacatata--tcataactcatcaaagctagtattacttccgccttcatttcttatcaacaaaatggagagtat 20014715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 26648938 - 26648878
Alignment:
Q  33 agaaataagagctatgttaacttactcatgatgaaattaggaaagagttatgcttcacttc 93  Q
    |||||||| |||||  |||| ||||||||||  |||||| | |||||||||||||||||||    
T  26648938 agaaataaaagctacattaaattactcatgaaaaaattaaggaagagttatgcttcacttc 26648878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 165 - 682
Target Start/End: Original strand, 26353295 - 26353815
Alignment:
Q  165 acatagcaaaat--gtcttagtcatgcaaatcctacttatagataaataataacacaagcatatcagttaataaaaatttatacatcacaactcattaaa 262  Q
    ||||||||||||  || ||| |||||| ||| |||| |||| | ||  |||||||||||||||||||||||||||||| |||| || |  ||||||||||    
T  26353295 acatagcaaaatatgtgttactcatgccaatactacctatatacaaccaataacacaagcatatcagttaataaaaatatatagatta--actcattaaa 26353392  T
Q  263 actaataatactttctccttcatttgttgtcaacaaaatgcagagtat-aaaagagcatcaatgtcatgagtttcataaagaaaagtcaaaaacaaannn 361  Q
    |||| || |||||  ||||||| ||||| |||||| |||  ||||||| |||||||||||| |||| |||||||||| |||  || |||||||||||       
T  26353393 actagtattacttattccttcaattgttttcaacacaatcaagagtatgaaaagagcatcactgtcgtgagtttcatgaagggaattcaaaaacaaaata 26353492  T
Q  362 nnnnna-aggaagaa-acgatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaacc 459  Q
           | |||||| | |||| ||| ||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||  | || | ||||| |    
T  26353493 aagttttaagaagaagatgatggtggttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaatc 26353592  T
Q  460 gtaatatctcttcctgttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttc 559  Q
    |||| ||||||||||||||||||||||||||   ||| |||||||||| ||||| | ||| | |||||||| |||||| || ||||| ||| ||| |||     
T  26353593 gtaacatctcttcctgttgtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaaccacaagttcatgatcactttcttt 26353692  T
Q  560 ccttcctttttcttcagctgtttctttagcgtctgcttgagcagccatatccgagtgaaactgagaatattgctgcgcagcagttacattgttgttcgga 659  Q
     ||||||| | ||||| | ||||||||||| |||||||||||||  ||||||| |  |||||||  || ||||| || | ||||||||||||||  || |    
T  26353693 tcttccttgtccttcaaccgtttctttagcttctgcttgagcagaaatatccgggaaaaactgaagatcttgctccgtaacagttacattgttggacgaa 26353792  T
Q  660 gcaacttcttttctgatagaaaa 682  Q
    |  |||| |||| ||||||||||    
T  26353793 gagactttttttgtgatagaaaa 26353815  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 376 - 653
Target Start/End: Complemental strand, 9816573 - 9816296
Alignment:
Q  376 acgatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaatatctcttcctg 475  Q
    |||||| ||| ||||||||| | | || ||||||||| || |||||||||||||||||| ||||||||  |||| | |||||| | || |||||||| ||    
T  9816573 acgatggtggttgttgattcttgagaaaactagtgagaagatgcctcaactcttcatccctcttctccttcaaatctattaactgaaacatctcttcttg 9816474  T
Q  476 ttgtcttgccagacgtgcgagctcctcttgattcttcatgcattccacttttaacaaaaccataacttcatcatctcttgcttcccttcctttttcttca 575  Q
    ||||||||||| |||    || |||| ||||| ||||| |  || | |||||||| |||||| ||| |||| ||| ||| |||  |||||||||||||||    
T  9816473 ttgtcttgccaaacgcctaagttccttttgatccttcaagtgttgctcttttaaccaaaccagaacatcatgatcactttcttttcttcctttttcttca 9816374  T
Q  576 gctgtttctttagcgtctgcttgagcagccatatccgagtgaaactgagaatattgctgcgcagcagttacattgttg 653  Q
     |   ||||| ||| ||||| |||||||  ||||| ||| ||||||||  || ||||| | |  ||||||||||||||    
T  9816373 accacttcttcagcttctgcgtgagcagaaatatcagagcgaaactgaagatcttgctccacgacagttacattgttg 9816296  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 26353187 - 26353231
Alignment:
Q  49 ttaacttactcatgatgaaattaggaaagagttatgcttcacttc 93  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  26353187 ttaagttactcatgatgaaattaggaaagagttatgcttcacttc 26353231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 9816908 - 9816859
Alignment:
Q  104 ttgctaagattagattcacttcatgattttgttttctgcacttcattata 153  Q
    |||||||||||||||||||||||||| | | ||||||||| |||||||||    
T  9816908 ttgctaagattagattcacttcatgactattttttctgcatttcattata 9816859  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 26353080 - 26353109
Alignment:
Q  6 cagaaagaaattgacagcagaggatctaga 35  Q
    ||||||||||||||||||||||||||||||    
T  26353080 cagaaagaaattgacagcagaggatctaga 26353109  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 28943913 - 28943977
Alignment:
Q  104 ttgctaagattagattcacttcatgattttgttttctgcacttcattatatgttctttatcacat 168  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||  |||||||| ||||    
T  28943913 ttgctaagattagattcacttcatgattattttttctgcatttcattatacattctttattacat 28943977  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 22654864 - 22654933
Alignment:
Q  99 caaaattgctaagattagattcacttcatgattttgttttctgcacttcattatatgttctttatcacat 168  Q
    ||||||||||||||||| ||||||||||| ||| | ||| ||  || ||||||||| |||||||||||||    
T  22654864 caaaattgctaagattatattcacttcatcattatttttcctttacctcattatatattctttatcacat 22654933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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