View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16140_low_1 (Length: 679)

Name: NF16140_low_1
Description: NF16140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16140_low_1
NF16140_low_1
[»] chr3 (12 HSPs)
chr3 (183-668)||(777955-778440)
chr3 (18-129)||(778493-778604)
chr3 (333-442)||(1186226-1186335)
chr3 (333-442)||(1204290-1204399)
chr3 (333-508)||(476034-476209)
chr3 (340-442)||(1304691-1304793)
chr3 (332-456)||(480945-481069)
chr3 (316-440)||(5361014-5361138)
chr3 (375-455)||(7125963-7126043)
chr3 (331-390)||(2996512-2996571)
chr3 (331-390)||(45870518-45870577)
chr3 (338-455)||(7118764-7118881)
[»] chr4 (1 HSPs)
chr4 (290-456)||(52186779-52186945)
[»] chr2 (4 HSPs)
chr2 (333-456)||(43864018-43864142)
chr2 (333-522)||(43867444-43867633)
chr2 (287-444)||(43875198-43875355)
chr2 (311-417)||(38989087-38989193)
[»] scaffold0438 (1 HSPs)
scaffold0438 (333-439)||(5312-5418)
[»] chr5 (2 HSPs)
chr5 (354-439)||(33958061-33958146)
chr5 (336-434)||(7894989-7895086)
[»] chr7 (5 HSPs)
chr7 (338-448)||(6889146-6889256)
chr7 (338-417)||(32413624-32413703)
chr7 (336-394)||(44501473-44501531)
chr7 (374-455)||(6844163-6844244)
chr7 (374-418)||(9235845-9235889)
[»] chr6 (6 HSPs)
chr6 (338-417)||(7115545-7115624)
chr6 (338-417)||(7120617-7120696)
chr6 (338-417)||(7124021-7124100)
chr6 (338-417)||(8656650-8656729)
chr6 (338-404)||(7140748-7140814)
chr6 (338-404)||(8680362-8680428)
[»] chr1 (2 HSPs)
chr1 (331-455)||(28928421-28928545)
chr1 (350-417)||(14288895-14288962)
[»] scaffold0896 (2 HSPs)
scaffold0896 (352-417)||(1471-1536)
scaffold0896 (352-417)||(2254-2319)


Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 183 - 668
Target Start/End: Complemental strand, 778440 - 777955
Alignment:
Q  183 catccacatgcctaataactaacaatcaataccttctcctatcttcattttcttgtagaattgtctgtttatttctcaaacaacaatggagacacataag 282  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  778440 catccacatgcctaataactaacaatcaataccttctcccattttcattttcttgtagaattctttgtttatttctcaaacaacaatggagacacataag 778341  T
Q  283 aggcaaggacaacaaaaataaacacacaatcaatgacttgacagatgatgttctccttcacatactatcttttttgaaagccaaagaggcagttcaaact 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  778340 aggcaaggacaacaaaaataaacacacaatcaatgacttgacagatgatgttctccttcacatactatcttttttgaaagccaaagaggcagtccaaact 778241  T
Q  383 tgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacattaagttcttcacactttagaacctccgacagttttgaagaattcg 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  778240 tgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacattaagttcttcacactttagaacctccgacagttttgaagaattcg 778141  T
Q  483 tttctcagattttgtctcttcgtgatggctcaatcactatccgtgttctcgactttccgcacaattattgtatggagcatagcctactccaaaggattat 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||    
T  778140 tttctcagattttgtctcttcgtgatggctcaatcactatccgtgttcttgactttcagcgcaattattgtatggagcatagcctactccaaaggattat 778041  T
Q  583 taaatacgttgtttcacacaatgtccagcacttgataatggatttcccctgtgatattaaacattttccatcatgcttcttttcat 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  778040 taaatacgttgtttcacacaatgtccagcacttgataatggatttcccctgtgatattaatcattttccatcatgcttcttttcat 777955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 778604 - 778493
Alignment:
Q  18 attatcgttttttaattaggttagatttcttcatcagtaaacnnnnnnntctaaaacacaattttgaagagaaacatttctttgtcatcttttgagattg 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  778604 attatcgttttttaattaggttacatttcttcatcagtaaacaaaaaaatctaaaacacaattttgaagagaaacatttctttgtcatcttttgagattg 778505  T
Q  118 tggccgtatgtg 129  Q
    ||||||||||||    
T  778504 tggccgtatgtg 778493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 333 - 442
Target Start/End: Original strand, 1186226 - 1186335
Alignment:
Q  333 ttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactct 432  Q
    |||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | |||  |||||||    
T  1186226 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactct 1186325  T
Q  433 tacattaagt 442  Q
    ||||||||||    
T  1186326 tacattaagt 1186335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 333 - 442
Target Start/End: Original strand, 1204290 - 1204399
Alignment:
Q  333 ttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactct 432  Q
    |||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | |||  |||||||    
T  1204290 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactct 1204389  T
Q  433 tacattaagt 442  Q
    ||||||||||    
T  1204390 tacattaagt 1204399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 333 - 508
Target Start/End: Original strand, 476034 - 476209
Alignment:
Q  333 ttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactct 432  Q
    |||||||||||| ||| || ||||| || |||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| | ||| ||||| ||    
T  476034 ttctccttcacacactctcctttttaaacgccaaagaagccgttcaaacttgtattttatccaaaagatggatcaatctctggaatactcttcccaccct 476133  T
Q  433 tacattaagttcttcacactttagaacctccgacagttttgaagaattcgtttctcagattttgtctcttcgtgat 508  Q
    |||| ||||||||||| ||||||| |||| |   ||||| ||  ||||  | ||||||||||| ||||||||||||    
T  476134 tacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagattttctctcttcgtgat 476209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 340 - 442
Target Start/End: Complemental strand, 1304793 - 1304691
Alignment:
Q  340 tcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacatta 439  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | |||  ||||||||||||||    
T  1304793 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactcttacatta 1304694  T
Q  440 agt 442  Q
    |||    
T  1304693 agt 1304691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 332 - 456
Target Start/End: Original strand, 480945 - 481069
Alignment:
Q  332 gttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactc 431  Q
    ||||||| || |||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| | ||| ||||| |    
T  480945 gttctccatctcatactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacgc 481044  T
Q  432 ttacattaagttcttcacactttag 456  Q
    |||| |||||||||||| |||||||    
T  481045 ttaccttaagttcttcaaactttag 481069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 440
Target Start/End: Complemental strand, 5361138 - 5361014
Alignment:
Q  316 tgacttgacagatgatgttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctgg 415  Q
    ||||||| | |||||||||| | ||||||| || || ||||| || | |||| | ||  | |||||||||||||| ||||||||||||| ||||||||||    
T  5361138 tgacttgtccgatgatgttcccgttcacatgctctcctttttaaacgtcaaaaaagccatccaaacttgcattttatccaaaagatggaccaatctctgg 5361039  T
Q  416 aaaattctacccactcttacattaa 440  Q
    || | ||| || |||||| ||||||    
T  5361038 aagactcttccaactcttgcattaa 5361014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 7125963 - 7126043
Alignment:
Q  375 ttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacattaagttcttcacacttta 455  Q
    |||||||||| || ||||||||||||||||  ||||||||||||  ||| || || |||||||||| ||||||||| ||||    
T  7125963 ttcaaacttgtatcttgtccaaaagatggaagaatctctggaaacgtcttccaacccttacattaatttcttcacaattta 7126043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 390
Target Start/End: Complemental strand, 2996571 - 2996512
Alignment:
Q  331 tgttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcatttt 390  Q
    |||| ||||||||||||| || ||||||||  | ||||| ||||||||||||||||||||    
T  2996571 tgttatccttcacatactttcatttttgaacacaaaagatgcagttcaaacttgcatttt 2996512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 390
Target Start/End: Complemental strand, 45870577 - 45870518
Alignment:
Q  331 tgttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcatttt 390  Q
    |||| ||||||||||||| || |||| ||| |||||||| ||||||||||||||| ||||    
T  45870577 tgttatccttcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgtttt 45870518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 455
Target Start/End: Original strand, 7118764 - 7118881
Alignment:
Q  338 cttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacat 437  Q
    ||||||||||| || | |||||||| |||| |  | ||||||||||  ||| | |||||||||||||  ||||| |||||   ||| ||||| ||||||     
T  7118764 cttcacatactctcctctttgaaagtcaaacaaaccgttcaaacttctattctctccaaaagatggaaaaatctatggaagcatcttcccacccttacac 7118863  T
Q  438 taagttcttcacacttta 455  Q
    ||| ||||||||||||||    
T  7118864 taacttcttcacacttta 7118881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 52186779 - 52186945
Alignment:
Q  290 gacaacaaaaataaacacacaatcaatgacttgacagatgatgttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattt 389  Q
    |||||||||||| || |||  |||| ||||||||| |||  ||||||||| ||| |||| || ||| |||| || ||| |||| |||||||| |||||||    
T  52186779 gacaacaaaaatgaagacattatcagtgacttgactgattctgttctcctccacctactctcctttctgaacgcaaaacaggccgttcaaacctgcattt 52186878  T
Q  390 tgtccaaaagatggatcaatctctggaaaattctacccactcttacattaagttcttcacactttag 456  Q
    |||||||||||||||||| ||||||||  | ||| |||||||||||| ||||||||||| |||||||    
T  52186879 tgtccaaaagatggatcattctctggaggagtcttcccactcttacactaagttcttcatactttag 52186945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 333 - 456
Target Start/End: Complemental strand, 43864142 - 43864018
Alignment:
Q  333 ttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccact-c 431  Q
    ||||| |||||||||| || |||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||| ||||| | ||| || |||      
T  43864142 ttctcattcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcctactaa 43864043  T
Q  432 ttacattaagttcttcacactttag 456  Q
    ||||||||||||||||| |||||||    
T  43864042 ttacattaagttcttcaaactttag 43864018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 333 - 522
Target Start/End: Complemental strand, 43867633 - 43867444
Alignment:
Q  333 ttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactct 432  Q
    ||||| ||||| |||| || |||||||| || |||||||| | |||||||||||||||||||||||||||||||| |||||||||   ||| || ||| |    
T  43867633 ttctcattcacgtactgtcctttttgaacgcaaaagaggccgctcaaacttgcattttgtccaaaagatggatcactctctggaagggtcttcctactat 43867534  T
Q  433 tacattaagttcttcacactttagaacctccgacagttttgaagaattcgtttctcagattttgtctcttcgtgatggctcaatcactat 522  Q
    |||||||||||||||  ||||||| |||    | ||||| |  |||||| | |||||  |||| |||||||| |||||||||| ||||||    
T  43867533 tacattaagttcttcgaactttaggaccgagaaaagtttagccgaattcctgtctcactttttatctcttcgcgatggctcaaccactat 43867444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 287 - 444
Target Start/End: Complemental strand, 43875355 - 43875198
Alignment:
Q  287 aaggacaacaaaaataaacacacaatcaatgacttgacagatgatgttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgca 386  Q
    ||||||||||||||| || |||  |||| | ||||||  |||  | ||||| |||||||| | || ||||| || || |||||||  |||||||||||||    
T  43875355 aaggacaacaaaaatgaagacattatcagtaacttgatcgattgtattctcattcacatagtgtcctttttaaatgcaaaagaggtcgttcaaacttgca 43875256  T
Q  387 ttttgtccaaaagatggatcaatctctggaaaattctacccactcttacattaagttc 444  Q
    ||||||||||||||||||||||||| ||||| | ||| ||||||||||||||| ||||    
T  43875255 ttttgtccaaaagatggatcaatctttggaagagtcttcccactcttacattatgttc 43875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 311 - 417
Target Start/End: Original strand, 38989087 - 38989193
Alignment:
Q  311 atcaatgacttgacagatgatgttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatc 410  Q
    |||| ||||||||| |||   ||||||||||||||||| || ||| | || || | | |||| |||||||| ||| ||||||||||||||||||||| ||    
T  38989087 atcagtgacttgaccgattcggttctccttcacatactgtcctttctaaacgcaatacaggctgttcaaacatgcgttttgtccaaaagatggatcattc 38989186  T
Q  411 tctggaa 417  Q
    |||||||    
T  38989187 tctggaa 38989193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 333 - 439
Target Start/End: Original strand, 5312 - 5418
Alignment:
Q  333 ttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactct 432  Q
    ||||| |||||||||| || ||||||||  | | |||||| |||||||| |||||||| |||||||||||||||||||||||||| | ||| ||||||||    
T  5312 ttctcattcacatactgtcctttttgaacacaagagaggccgttcaaacatgcattttatccaaaagatggatcaatctctggaagactcttcccactct 5411  T
Q  433 tacatta 439  Q
    |||||||    
T  5412 tacatta 5418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 354 - 439
Target Start/End: Complemental strand, 33958146 - 33958061
Alignment:
Q  354 ttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacatta 439  Q
    |||||||  ||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||| | |||||||||||||    
T  33958146 ttttgaacaccagagaggccgttcaaacttgcattttatccaaaagatggatcaatctctggaagactcttcacactcttacatta 33958061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 434
Target Start/End: Original strand, 7894989 - 7895086
Alignment:
Q  336 tccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactctta 434  Q
    |||||||||| || || |||||||| |||||| | || |||||| ||||||||||||| |  |||||||  |||||||||||| |||||||| ||||||    
T  7894989 tccttcacattctttcctttttgaatgccaaacaagccgttcaa-cttgcattttgtctatcagatggaagaatctctggaaacttctacccgctctta 7895086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 338 - 448
Target Start/End: Original strand, 6889146 - 6889256
Alignment:
Q  338 cttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacat 437  Q
    ||||||||||| ||||||||| |  ||| ||| || ||||||||||||||| | ||||||||||||| |||||||||||||  ||| || || |||| ||    
T  6889146 cttcacatactctcttttttggacaccatagacgctgttcaaacttgcattctatccaaaagatggaacaatctctggaaatatcttcctacccttatat 6889245  T
Q  438 taagttcttca 448  Q
    |||||||||||    
T  6889246 taagttcttca 6889256  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 32413624 - 32413703
Alignment:
Q  338 cttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaa 417  Q
    ||||||||||| || | ||||||  ||||| | || |||||||||||||||||||||| ||||||||  |||||||||||    
T  32413624 cttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaa 32413703  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 336 - 394
Target Start/End: Complemental strand, 44501531 - 44501473
Alignment:
Q  336 tccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtcc 394  Q
    ||||||||||||| ||||||||||| |||||| | || ||||| |||||||||||||||    
T  44501531 tccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 44501473  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 6844163 - 6844244
Alignment:
Q  374 gttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactcttacattaagttcttcacacttta 455  Q
    ||||||||||||||| | ||||||||||||| |||||| ||||||  ||| |||||||||| ||| |   ||||||||||||    
T  6844163 gttcaaacttgcattctatccaaaagatggaacaatctttggaaacatcttcccactcttatattgaagacttcacacttta 6844244  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 9235889 - 9235845
Alignment:
Q  374 gttcaaacttgcattttgtccaaaagatggatcaatctctggaaa 418  Q
    ||||||||||||||| | ||||||||||||| |||||| ||||||    
T  9235889 gttcaaacttgcattctctccaaaagatggaacaatctttggaaa 9235845  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 338 - 417
Target Start/End: Complemental strand, 7115624 - 7115545
Alignment:
Q  338 cttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaa 417  Q
    ||||||||||| |||||||||||  ||||| | ||||||||||||||  ||||||||||||||||||  |||||||||||    
T  7115624 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7115545  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 338 - 417
Target Start/End: Complemental strand, 7120696 - 7120617
Alignment:
Q  338 cttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaa 417  Q
    ||||||||||| |||||||||||  ||||| | ||||||||||||||  ||||||||||||||||||  |||||||||||    
T  7120696 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7120617  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 338 - 417
Target Start/End: Complemental strand, 7124100 - 7124021
Alignment:
Q  338 cttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaa 417  Q
    ||||||||||| |||||||||||  ||||| | ||||||||||||||  ||||||||||||||||||  |||||||||||    
T  7124100 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaa 7124021  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 338 - 417
Target Start/End: Complemental strand, 8656729 - 8656650
Alignment:
Q  338 cttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaa 417  Q
    ||||||||||| |||||||||||  ||||| | ||||||||||||||  ||||| ||||||||||||  |||||||||||    
T  8656729 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaa 8656650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 338 - 404
Target Start/End: Complemental strand, 7140814 - 7140748
Alignment:
Q  338 cttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatgga 404  Q
    ||||||||||| |||||||||||  | ||| | |||||||||||||| |||||||||||||||||||    
T  7140814 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaagatgga 7140748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 338 - 404
Target Start/End: Complemental strand, 8680428 - 8680362
Alignment:
Q  338 cttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatgga 404  Q
    ||||||||||| |||||||||||  | ||| | |||||||||||||| |||||||||||||||||||    
T  8680428 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtccaaaagatgga 8680362  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 331 - 455
Target Start/End: Complemental strand, 28928545 - 28928421
Alignment:
Q  331 tgttctccttcacatactatcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccact 430  Q
    |||||| ||||||||| |||||||||| ||||||||||| || ||||||||||||||  | ||||   ||||||  |||||||||||   ||| |||||     
T  28928545 tgttctacttcacatattatcttttttaaaagccaaagaagctgttcaaacttgcatactctccactcgatggaagaatctctggaagcgtcttcccacc 28928446  T
Q  431 cttacattaagttcttcacacttta 455  Q
    |||||||||||| | ||||| ||||    
T  28928445 cttacattaagtccctcacatttta 28928421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 417
Target Start/End: Complemental strand, 14288962 - 14288895
Alignment:
Q  350 tcttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaa 417  Q
    |||||||||||| ||||| | || ||||||||||||||  | |||||||||||||  |||||||||||    
T  14288962 tcttttttgaaaaccaaatacgccgttcaaacttgcatactctccaaaagatggaagaatctctggaa 14288895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 417
Target Start/End: Original strand, 1471 - 1536
Alignment:
Q  352 ttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaa 417  Q
    |||||||||  ||||| | ||||||||||||||  ||||| ||||||||||||  |||||||||||    
T  1471 ttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaa 1536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 417
Target Start/End: Original strand, 2254 - 2319
Alignment:
Q  352 ttttttgaaagccaaagaggcagttcaaacttgcattttgtccaaaagatggatcaatctctggaa 417  Q
    |||||||||  ||||| | ||||||||||||||  ||||| ||||||||||||  |||||||||||    
T  2254 ttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaa 2319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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