View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16140_low_10 (Length: 254)
Name: NF16140_low_10
Description: NF16140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16140_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2223346 - 2223111
Alignment:
| Q |
1 |
ccgccgtcgaacccacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccattttcataaaacaagaacacatagcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2223346 |
ccgccgtcgaacccacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccatcttcataaaacaagaacacatagcttc |
2223247 |
T |
|
| Q |
101 |
acaccaatccaatccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcagcctatcacggcaagcattcgccaccgtcataccacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2223246 |
acaccaatccaatccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcaacctatcacggcaagcattcgccaccgtcataccacca |
2223147 |
T |
|
| Q |
201 |
tgaccgtcataaaccgcaaagaaatcataaccgcac |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2223146 |
tgaccgtcataaaccgcaaagaaatcataaccgcac |
2223111 |
T |
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