View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16140_low_11 (Length: 215)
Name: NF16140_low_11
Description: NF16140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16140_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 32321969 - 32321796
Alignment:
| Q |
1 |
tcttgtgtgtaggttggttcatcttttcgaagcatcaccttatagtaccgacaagtgtttcaaaagaggtctgtgtctgtaatttggatctaaacaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32321969 |
tcttgtgtgtaggttggttcatcttttcgaagcatcaccttatagtaccgacaagtgtttcaaaagaggtctgtgtctgtaatttggatctaaacaaaca |
32321870 |
T |
|
| Q |
101 |
agattttctatgctttagcatcattgctatatattctccacaatttcaatgatcacaagctgccatttgaatttgaaa |
178 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32321869 |
agattttctatgctttagcatcattgc----tattctccacaatttcaatgatcacaagctgccatttgaatttgaaa |
32321796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 32320398 - 32320366
Alignment:
| Q |
139 |
cacaatttcaatgatcacaagctgccatttgaa |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
32320398 |
cacaatttcaatgatcacaagctgccatttgaa |
32320366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University