View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16140_low_2 (Length: 472)
Name: NF16140_low_2
Description: NF16140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16140_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 78 - 346
Target Start/End: Original strand, 27154729 - 27154997
Alignment:
| Q |
78 |
catgtgagtcttcaggacctcactagcttgactcactgttggctgctccaaatccttagatagctccaacatcttcttaacagctttcacatacttatct |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| || || |||| |||||||||| ||||||||||||||||| |
|
|
| T |
27154729 |
catgtgagtcttcaggacctcactagcttgacccattgttggctgctccaaatccttagacaggtcgaacaccttcttaacaactttcacatacttatct |
27154828 |
T |
|
| Q |
178 |
tccacaaattgagcgatagatcttccaccttcacttgttacagcttctgaagcttcggaagacaacttcaacttccttgtaggtctccttgacttgtgca |
277 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27154829 |
tccacaaactgagcgatggatcttccaccttcacttgttacagcttctgaagcttcggaagacaacttcaacttccttgtaggtctccttgacttgtgca |
27154928 |
T |
|
| Q |
278 |
gaggctcttgaacaaccttcttaatgggtgaagttctattagaacctccacctctagttttctttgaca |
346 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27154929 |
gaggctcttgaacaaccttcttaactggtgaagttctatcagaacctccacctctagttttctttgaca |
27154997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 78 - 226
Target Start/End: Original strand, 27112936 - 27113084
Alignment:
| Q |
78 |
catgtgagtcttcaggacctcactagcttgactcactgttggctgctccaaatccttagatagctccaacatcttcttaacagctttcacatacttatct |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| || || |||| |||||||||| ||||||||||||||||| |
|
|
| T |
27112936 |
catgtgagtcttcaggacctcactagcttgacccattgttggctgctccaaatccttagacaggtcgaacaccttcttaacaactttcacatacttatct |
27113035 |
T |
|
| Q |
178 |
tccacaaattgagcgatagatcttccaccttcacttgttacagcttctg |
226 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27113036 |
tccacaaactgagcgatggatcttccaccttcacttgttacagcttctg |
27113084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 15554464 - 15554523
Alignment:
| Q |
48 |
ttctgaagtaccttgttccaatttaaccttcatgtgagtcttcaggacctcactagcttg |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15554464 |
ttctgaataaccttgttccaatttaaccttcatgtgagtcttaaggacctcactagcttg |
15554523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 15650079 - 15650129
Alignment:
| Q |
57 |
accttgttccaatttaaccttcatgtgagtcttcaggacctcactagcttg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15650079 |
accttgttccaatttaaccttcatgtgagtcttaaggacctcactagcttg |
15650129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University