View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16140_low_4 (Length: 455)
Name: NF16140_low_4
Description: NF16140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16140_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 40411752 - 40412179
Alignment:
| Q |
9 |
gaagaatatttgtaggcaaacacactttggttggtgagcaattgatccacaatagggccagaaacaaaaagaattgctgcttggaatggagcagaatggt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40411752 |
gaagaatatttgtaggcaaacacactttggttggtgagcaattgatccacaatagggccagaaacaaaaagaattgctgcttggaatggagcagaatggt |
40411851 |
T |
|
| Q |
109 |
agagcaactgtgtggaagaaacattaagcgtcttttgtattgtgttggttagctaaattaagcactaagttaagaaatctaaatatatcaaattttcttc |
208 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |
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| T |
40411852 |
agagcaactgtgtggaagaaacattaagcttcttttgtattgtgttggttagctaaattaatcaccaagttaagaaatctaaatat--caaattttcttc |
40411949 |
T |
|
| Q |
209 |
acctttaagccatcataactaattaacaacaataaatcacatagtagctatcataaaggatacaatttggctaacacatgttgttatgattgctagaagg |
308 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40411950 |
acctttaagccatcatatctaattaacaacaataaatcacatagtagctattataaaggatacaatttggctaacacatgttgttatgattgctagaagg |
40412049 |
T |
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| Q |
309 |
gaaataatggttcccacaaaattgagttgaagatcagtgatagaggcaacaccaactccaacaagtaataggaatagagagaattttattttctggctgc |
408 |
Q |
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| T |
40412050 |
gaaataatggttcccacaaaattgagttgaagatcagtgatagaggcaacaccaactccaacaagtaataggaatagagtgaattttattttctggctgc |
40412149 |
T |
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| Q |
409 |
atgaattagcacaagggatcattagcatgt |
438 |
Q |
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| T |
40412150 |
atgaattagcacaagggatcattagcatgt |
40412179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 262 - 409
Target Start/End: Complemental strand, 21683429 - 21683282
Alignment:
| Q |
262 |
taaaggatacaatttggctaacacatgttgttatgattgctagaagggaaataatggttcccacaaaattgagttgaagatcagtgatagaggcaacacc |
361 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||| |||| ||||||||| ||||||||||| ||||| || |||||||| |||| || |
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| T |
21683429 |
taaaggatacaatttggccaacacatgttgttatgatagctagaagtgaaagaatggttccaacaaaattgagctgaaggtctgtgatagaagcaatgcc |
21683330 |
T |
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| Q |
362 |
aactccaacaagtaataggaatagagagaattttattttctggctgca |
409 |
Q |
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||||||||||||||| | ||||||||||| ||| || ||| ||||||| |
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| T |
21683329 |
aactccaacaagtaagaagaatagagagagtttaatattccggctgca |
21683282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 21683824 - 21683651
Alignment:
| Q |
11 |
agaatatttgtaggcaaacacactttggttggtgagcaattgatccacaatagggccagaaacaaaaagaattgctgcttggaatggagcagaatggtag |
110 |
Q |
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|||||||||||| ||||| ||| |||| ||||| |||| |||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21683824 |
agaatatttgtatgcaaagacattttgcttggttagcatccgatcgacaagagggcctgaaacaaaaagaattgctgcttggaatggagcagactggtag |
21683725 |
T |
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| Q |
111 |
agcaactgtgtggaagaaacattaagcgtcttttgtattgtgttggttagctaaattaagcactaagttaagaa |
184 |
Q |
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|| | |||||||||| ||||||||| |||| |||||||||||||| |||| |||| || ||||||||||| |
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| T |
21683724 |
agaagttgtgtggaagtgacattaagcttcttctgtattgtgttggtaagctgaattgttcaataagttaagaa |
21683651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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