View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16140_low_8 (Length: 284)
Name: NF16140_low_8
Description: NF16140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16140_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 37583733 - 37584002
Alignment:
| Q |
1 |
gtggaaaataaactatcattttccacacacagcattgaagaaaatgaactgatatcaaaaatggaattttagttacctgccgtgactcagcgcaaatatc |
100 |
Q |
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| T |
37583733 |
gtggaaaataaactatcattttccacacacagcattgaagaaaaggaactgatatcaaaagtggaattttagttacctgccgtgactcagcgcaaatatc |
37583832 |
T |
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| Q |
101 |
ttttttgaaacaaatccagcaccttcagttttgcgagccgttctaaactagttatataatcctgtgcggcagtgacagatac-acaaacttaaaatggca |
199 |
Q |
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| T |
37583833 |
ttttttgaaacaaatccagcaccttcggttttgcgagccgttctaaactagttatataatcctgtgtggcagtgacagatacaaaaaacttaaaatggca |
37583932 |
T |
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| Q |
200 |
ttatatttggagttgtgtttaatattgtgcatgaagccaaagtcacac---aaaaaatatccaacaataa |
266 |
Q |
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| T |
37583933 |
ttatatttggagttgtatttaatattgtgcatgaagccaaagtcacacaaaaaaaaatatccaacaataa |
37584002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 37590117 - 37590327
Alignment:
| Q |
1 |
gtggaaaataaactatcattttccacacaca-gcattgaagaaaatgaactgatatcaaaaatggaattttagttacctgccgtgactcagcgcaaatat |
99 |
Q |
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| T |
37590117 |
gtggaaaatgaactatcattttccatacaaaagccttaaagaaaacgaactaatatcaaaagtggaattataattacctaccgtgagtgagcgcaaatat |
37590216 |
T |
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| Q |
100 |
cttttttgaaacaaatccagcaccttcagttttgcgagccgttctaaactagttatataatcctgtgcggcagtgacagatacacaaacttaaaatggca |
199 |
Q |
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| T |
37590217 |
cttttctgaaacaaatccagcccattcggttttgcgagccgttctaaactagttatataatcctgtgtggcagtgaaagatacaccaacttaaaacggca |
37590316 |
T |
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| Q |
200 |
ttatatttgga |
210 |
Q |
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| T |
37590317 |
ttatatttgga |
37590327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 37463914 - 37463765
Alignment:
| Q |
35 |
ttgaagaaaatgaactgatatcaaaaatggaattttagttacctgccgtgactcagcgcaaatatcttttttgaaacaaatccagcaccttcagttttgc |
134 |
Q |
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|||||||||||||||||||||| | | ||||||| ||| ||| | |||||| | |||||||||||||| ||||||||||||||||||||||| |||| || |
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| T |
37463914 |
ttgaagaaaatgaactgatatccagagtggaattatagctacataccgtgagtgagcgcaaatatcttctttgaaacaaatccagcaccttcggtttcgc |
37463815 |
T |
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| Q |
135 |
gagccgttctaaactagttatataatcctgtgcggcagtgacagatacac |
184 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
37463814 |
gagctgttctaaactagttatataatcctgtgtggcagtgacatatacac |
37463765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 49020996 - 49020960
Alignment:
| Q |
89 |
agcgcaaatatcttttttgaaacaaatccagcacctt |
125 |
Q |
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| T |
49020996 |
agcgcaaatatcttctttgaaataaatccagcacctt |
49020960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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