View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_high_2 (Length: 746)
Name: NF16141_high_2
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 48302588 - 48303073
Alignment:
| Q |
18 |
gaaatacaatgaaaaatagtgnnnnnnnccggaacatttattatcaaaactgaactctaatagatatattttatttagtcataggaagttgaaattcagt |
117 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48302588 |
gaaatacaatgaaaaatagtgaaaaaaaccggaacatttattatcaaaactgaactcaaatagatatattttatttagtcataggaagttgaaattcagt |
48302687 |
T |
|
| Q |
118 |
taccgttaatcaactcaagttaacaaaccaaaattaaaaccttttcgtaataaaaacactaatataggcaaatcaaaattcattcatactgagattatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48302688 |
taccgttaatcaactcaagttaacaaaccaaaattaaaaccttttcgtaataaaaacactaatataggcaaatcaaaattcattcatactgagattatta |
48302787 |
T |
|
| Q |
218 |
cacgttactagtacatcgcatgataatcggcaattacaaaagacacaaaaccattgccacaaacgcacaaacagactacaataaaaaagcagacatagcc |
317 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||| |
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| T |
48302788 |
cacattactagtacatagcatgataatcggcaattacaaaagacaaaaaaccattgccacacacgcacaaacagactaaaacaaaaaagcagacatagcc |
48302887 |
T |
|
| Q |
318 |
cttattctccaaacattgattctttctcaagcaaccttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaa |
417 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48302888 |
cttattctccaaacattgattcattctcaagcaaccttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaa |
48302987 |
T |
|
| Q |
418 |
gaacaccatcttgacaaagagcagaaacaccaccttcaacatcagcattctctggtaacacaaatttcctcataaacttaccaacc |
503 |
Q |
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| T |
48302988 |
gaacaccatcttgacaaacagcagaaacaccaccttcaacatcagcattctctggtaacacaaatttcctcataaacttaccaacc |
48303073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 560 - 739
Target Start/End: Original strand, 48303130 - 48303309
Alignment:
| Q |
560 |
accgcttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatgagtttggatac |
659 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48303130 |
accgcttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatgagtttggatac |
48303229 |
T |
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| Q |
660 |
tctttcacgtctgctggtgttgcagccattgcttttgcgtcgcgaacgtaggttcgtgttggtgcgtttagattcttctc |
739 |
Q |
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| T |
48303230 |
tctttcacgtctgctggtgttgcagccattgcttttgcgtcgcgaacgtaggttcgtgttggtgcgtttagattcttctc |
48303309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 344 - 503
Target Start/End: Original strand, 3744713 - 3744869
Alignment:
| Q |
344 |
tcaagcaaccttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaagaacaccatcttgacaaagagcagaa |
443 |
Q |
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||||||||||| ||||||||| ||| |||| |||||||| | |||||||||||| || | |||||||||| | ||||| ||||||||||||| ||||||| |
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| T |
3744713 |
tcaagcaacctgaacctgaatggttctaggtttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgacaaacagcagaa |
3744812 |
T |
|
| Q |
444 |
acaccaccttcaacatcagcattctctggtaacacaaatttcctcataaacttaccaacc |
503 |
Q |
| |
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||| || ||| || ||||||||| || | |||||||||||||||||||||||||||| |
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| T |
3744813 |
acagca---tcagtattagcattctcaggaagcacaaatttcctcataaacttaccaacc |
3744869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 561 - 649
Target Start/End: Original strand, 3744930 - 3745018
Alignment:
| Q |
561 |
ccgcttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatga |
649 |
Q |
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| T |
3744930 |
ccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatga |
3745018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 45928340 - 45928374
Alignment:
| Q |
128 |
caactcaagttaacaaaccaaaattaaaacctttt |
162 |
Q |
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| T |
45928340 |
caactcaagttaacaaaccaaaattaaaacttttt |
45928374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 565 - 673
Target Start/End: Complemental strand, 10462246 - 10462138
Alignment:
| Q |
565 |
ttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatgagtttggatactcttt |
664 |
Q |
| |
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|||||| || ||| || ||||||||||||| ||||||||| |||||||||||||| || |||| ||||| | |||| ||| |||||||| | || || || |
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| T |
10462246 |
ttatcacaaccactttatcatcttcaacctcaaccttgatatcaccagatttcaatcccggcaagtccatctcgaatacgaatgagttttggtattcctt |
10462147 |
T |
|
| Q |
665 |
cacgtctgc |
673 |
Q |
| |
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||||||||| |
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|
| T |
10462146 |
cacgtctgc |
10462138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 673
Target Start/End: Original strand, 10539878 - 10539986
Alignment:
| Q |
565 |
ttatcagaagcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatgagtttggatactcttt |
664 |
Q |
| |
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|||||| || |||||| ||||||||||||| ||||||||| ||| ||||||||| || |||| || | |||||||||| |||||| |||| || || |
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| T |
10539878 |
ttatcacaaccacattatcatcttcaacctcaaccttgatatcatcagatttcattcccagcatatctgtctcgaacacgtacgagttttgatattcctt |
10539977 |
T |
|
| Q |
665 |
cacgtctgc |
673 |
Q |
| |
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||||||||| |
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| T |
10539978 |
cacgtctgc |
10539986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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