View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16141_high_3 (Length: 636)
Name: NF16141_high_3
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 579; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 631
Target Start/End: Original strand, 14340743 - 14341359
Alignment:
| Q |
18 |
tatagaactaatacttgtcattcctatggtttagagattatacaatcatggagcaagagtgttttggattcacaatacaggtcctattggatgtataccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340743 |
tatagaactaatacttgtcattcctatggtttagagattatacaatcaaggagcaagagtgttttggattcacaatacaggtcctattggatgtataccc |
14340842 |
T |
|
| Q |
118 |
tattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340843 |
tattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggc |
14340942 |
T |
|
| Q |
218 |
agctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340943 |
agctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgc |
14341042 |
T |
|
| Q |
318 |
aaggagccaaggtaattatgttcaattaagtttttgttatctttaaattatcagttgcttattgaatgtgcacaattaagttttaacttttatgcttgca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14341043 |
aaggagccaaggtaattatgttcaattaagtttttgttatctttaaatgatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgca |
14341142 |
T |
|
| Q |
418 |
tgatttgtggcaggttttataaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgg---gaagtccataaaaaatggaa |
514 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14341143 |
tgatttgtggcaggttttatgaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgggaagaagtccataaaaaatggaa |
14341242 |
T |
|
| Q |
515 |
cattttatggctttgcatgtgatgacccctctacatatatcagctgggatggtatacactactcccaagcagcaaatgaatggattgttaaacaaattct |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14341243 |
cattttatggctttgcatgtgatgacccctctacatatatcagttgggatggtatacactactcccaagcagcaaatgaatggattgttaaacaaattct |
14341342 |
T |
|
| Q |
615 |
ctctggttcctcctctg |
631 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
14341343 |
ctctggttccttctctg |
14341359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 555
Target Start/End: Original strand, 3601863 - 3602400
Alignment:
| Q |
18 |
tatagaactaatacttgtcattcctatggtttagagattatacaatcatggagcaagagtgttttggattcacaatacaggtcctattggatgtataccc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
3601863 |
tatagaactaatacttgtcattcctatggtttagaaattatacaatgaagaggcaagagtgttttggattcacaacacaggtcctattgaatgtataccc |
3601962 |
T |
|
| Q |
118 |
tattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601963 |
tattattacttcttttatccacacaagaacgagaagggtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggc |
3602062 |
T |
|
| Q |
218 |
agctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3602063 |
agctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacggtcaaatatacacttatcagcaatgc |
3602162 |
T |
|
| Q |
318 |
aaggagccaaggtaattatgttcaattaagtttttgttatctttaaattatcagttgcttattgaatgtgcacaattaagttttaacttttatgcttgca |
417 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3602163 |
aaggaaccaaggta---atgttcaattaagtttttgttatctttaaaatatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgca |
3602259 |
T |
|
| Q |
418 |
tgatttgtggcaggttttataaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgg---gaagtccataaaaaatggaa |
514 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3602260 |
tgatttgtggcaggttttgtgaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattattgtgggaagaagtccataaaaaatggaa |
3602359 |
T |
|
| Q |
515 |
cattttatggctttgcatgtgatgacccctctacatatatc |
555 |
Q |
| |
|
|| |||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
3602360 |
cagtttatggcattgcatgtgatgattcctctacatatatc |
3602400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 3590935 - 3591225
Alignment:
| Q |
18 |
tatagaactaatacttgtcattcctatggtttagagattatacaatcatggagcaagagtgttttggattcacaatacaggtcctattggatgtataccc |
117 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||| |||||||||| | || |||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
3590935 |
tatagaactaatagttgtcattcttatggtttagaaattatacaatgaaggggcaagagtgttttggattcacaatacaggtcctattggatgttcatcc |
3591034 |
T |
|
| Q |
118 |
tattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggc |
217 |
Q |
| |
|
||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| || |
|
|
| T |
3591035 |
--------cttctattatccacacaagaagg------gtaacttagatgccaatggctgtgttaaacctcacaataagcttgctcaagaatataactggt |
3591120 |
T |
|
| Q |
218 |
agctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || |
|
|
| T |
3591121 |
agctaaaagaccaagtgtttcagctaaggagaaagtttccattagccaaatttacatatgttgatgtttacacagtaaaatataaacttatcagcaacgc |
3591220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 70 - 333
Target Start/End: Original strand, 3568917 - 3569173
Alignment:
| Q |
70 |
gcaagagtgttttggattcacaatacaggtcctattggatgtataccctattattacttcttttatccacacaagaacgagaagagtaacttggatgcca |
169 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||| || || ||| ||||||||||||||| | ||| ||||||||||| |
|
|
| T |
3568917 |
gcaagagtgttttcgattcacaatacaggtcctattggatgcttaccctatgataacatctattatccacacaagaaggggaa------cttggatgcca |
3569010 |
T |
|
| Q |
170 |
atggctgtgttaaacctcacaacgagcttgctcaggaatataacaggcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatt |
269 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3569011 |
atggttgttttaaacctcacaacgagcttgctcaggaatagaacaggcagctaaaagac-aagcgtttcagctaaggagaaagtttccattagccaaatt |
3569109 |
T |
|
| Q |
270 |
tacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggtaat |
333 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||| |||||| |
|
|
| T |
3569110 |
tacatatgttgatgtttacacagtaaaatagaaacttatcagcaacgcaaggagccagggtaat |
3569173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 385 - 468
Target Start/End: Original strand, 3569487 - 3569570
Alignment:
| Q |
385 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
468 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||| |||| || | ||||||||||||||||| |||||||||||| |
|
|
| T |
3569487 |
gtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggtcttgtgaatccattggaattttgctgtggaagttac |
3569570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 385 - 468
Target Start/End: Original strand, 3577213 - 3577296
Alignment:
| Q |
385 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
468 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| |||||||||| |||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
3577213 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggctggttttgtaaatccattgaaattttgctgtggaagttac |
3577296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 3602399 - 3602453
Alignment:
| Q |
577 |
tcccaagcagcaaatgaatggattgttaaacaaattctctctggttcctcctctg |
631 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
3602399 |
tcccaagcagcaaaggaatggattgctaaacaaattctctatggttccttctctg |
3602453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 468
Target Start/End: Original strand, 3591554 - 3591637
Alignment:
| Q |
385 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
468 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| ||||||||||||||||| | ||||||||| ||| || ||||||| |||| |
|
|
| T |
3591554 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattac |
3591637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 6e-82; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 20 - 333
Target Start/End: Original strand, 1409274 - 1409581
Alignment:
| Q |
20 |
tagaactaatacttgtcattcctatggtttagagattatacaatcatggagcaagagtgttttggattcacaatacaggtcctattggatgtatacccta |
119 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| | | |||||| | || |||||||||||||||||||||||| |||||| |||||||| | ||||| |
|
|
| T |
1409274 |
tagaactaatacttgtcattactatgttttagcaactctacaatgaaggggcaagagtgttttggattcacaatgtaggtccaattggatgcttgcccta |
1409373 |
T |
|
| Q |
120 |
ttattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggcag |
219 |
Q |
| |
|
| || || ||| ||||||||||||||| | |||||||||||| | |||||||||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
1409374 |
taataacatctattatccacacaagaagg------gtaacttggatgtctatggctgtgttatacctcacaatgagcttgctcaagaatataacaggcag |
1409467 |
T |
|
| Q |
220 |
ctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaa |
319 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||| |||||||||| |
|
|
| T |
1409468 |
ctaaaagacaaagtgtttcagctaaggcgaaagtttccattagccaagtttacatatgttgatgtgtacacagccaaatataaacttattagcaatgcaa |
1409567 |
T |
|
| Q |
320 |
ggagccaaggtaat |
333 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1409568 |
agagccaaggtaat |
1409581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 385 - 631
Target Start/End: Original strand, 1409817 - 1410059
Alignment:
| Q |
385 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttaccaaggtaacgaaatac |
484 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| |||||||||||||||| | ||||||||||||||||| |||||||||||| | ||| || | ||| |
|
|
| T |
1409817 |
gtgcacaattaggttttaactctcatgcttg----atttgtggcaggttttgtgaatccattggaattttgctgtggaagttactatggttaccacataa |
1409912 |
T |
|
| Q |
485 |
attattgtgggaagtccataaaaaatggaacattttatggctttgcatgtgatgacccctctacatatatcagctgggatggtatacactactcccaagc |
584 |
Q |
| |
|
||| | | |||| |||||| |||||||||| |||||||| | |||||||| | || |||| | |||| || |||||||||||||||||||| ||||| |
|
|
| T |
1409913 |
attgtgggttgaaggccataataaatggaacagtttatggcaatccatgtgataatccttctaaacatattagttgggatggtatacactactctcaagc |
1410012 |
T |
|
| Q |
585 |
agcaaatgaatggattgttaaacaaattctctctggttcctcctctg |
631 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||| |||||||| ||||| |
|
|
| T |
1410013 |
tgcaaatcaatgggttgctaaacaaattctctatggttccttctctg |
1410059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 70 - 330
Target Start/End: Original strand, 1412370 - 1412624
Alignment:
| Q |
70 |
gcaagagtgttttggattcacaatacaggtcctattggatgtataccctattattacttcttttatccacacaagaacgagaagagtaacttggatgcca |
169 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||| | |||| ||||||||| |||| |||||||| | ||||| | || |||| |
|
|
| T |
1412370 |
gcaagagtgttctggatacacaatacaggtccaattggatgcttgcccttcaattacttctcttatgagcacaagaagg------gtaacctagacgcca |
1412463 |
T |
|
| Q |
170 |
atggctgtgttaaacctcacaacgagcttgctcaggaatataacaggcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatt |
269 |
Q |
| |
|
|||||||||| |||||||| ||| | | ||||| |||| ||||| | ||||||| |||||||||| | | |||||||||| | | | |||||||| |
|
|
| T |
1412464 |
atggctgtgtgaaacctcagaacaaaatagctcaagaatttaacaagaagctaaaggaccaagtgtcttatctaaggagaaaactcctacaggccaaatt |
1412563 |
T |
|
| Q |
270 |
tacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
330 |
Q |
| |
|
||||||||||||| | |||| || ||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
1412564 |
tacatatgttgatatgtacaaagccaaatatgaactaatcagcaatgcaaggagccgaggt |
1412624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 1417191 - 1417259
Alignment:
| Q |
262 |
gccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
330 |
Q |
| |
|
||||||||||||||||||||| | |||| || |||| || ||| ||||||||||||| |||||||||| |
|
|
| T |
1417191 |
gccaaatttacatatgttgatatgtacaaagccaaacatgaactaatcagcaatgcaaagagccaaggt |
1417259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 1421679 - 1421747
Alignment:
| Q |
262 |
gccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
330 |
Q |
| |
|
||||||||||||||||||||| | |||| || |||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
1421679 |
gccaaatttacatatgttgatatgtacaaagctaaatatgaactaatcagcaatgcaaagagccaaggt |
1421747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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