View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_high_5 (Length: 556)
Name: NF16141_high_5
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 17 - 539
Target Start/End: Complemental strand, 25276247 - 25275741
Alignment:
| Q |
17 |
cagaaacgcacatttggccattacgcacaggtgctggtggatattgatatttcaaggcgtctcatctacgaattcatggtggaaagggaaggttttgctt |
116 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25276247 |
cagaaacgcacatttggccattacacgcaggtgctggtggatattgatatttcaaggcgtctcatctacgaagtcatggtggaaagggaaggtt------ |
25276154 |
T |
|
| Q |
117 |
ttcctgtcgaggttgattatgagtggctcccggatttctgttcacactgcaaaaatccccttggtattgattcctcgctcgctttttagaagtcatggtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25276153 |
----------ggttgattatgagtggctcccggatttctgttcacactgcaaaaatccccttggtattgattcctcgctcgctttttacaagtcatggtt |
25276064 |
T |
|
| Q |
217 |
aactctgaaattacggcaacagttgcagcttaacattctgatgcgccgactcatgatgttactgccaatacttttagctttgcattgcaaaatgtttcag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25276063 |
aactctgaaattacggcaacagttgcagcttaacattctgatgcgcctactcatgatgttactgccaatacttttagctttgcattgcaaaatgtttcag |
25275964 |
T |
|
| Q |
317 |
acgcaattcaacagggtttgtttcctcaacctgcctctcccgtgttggaattagctactgtagtggctcataatgacgtgcattcacttggagtcgagca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25275963 |
acgcaattcaacagggtttgtttcctcaacctgcctctcccgtgttggaattagctactgtagtggctcataatgacgtgcattcacttggagtcgagca |
25275864 |
T |
|
| Q |
417 |
aacacatccagatgatcagaacatgagcgttcccacttctccagctgctactccggttccatctattatagagcatgttgacgtgcatgaggatattttt |
516 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25275863 |
aacacatccagatgatcagaacatgagcgttcctacttctccagctgctactctggttccatctattatagagcatgttgacgtgcatgaggatattttt |
25275764 |
T |
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| Q |
517 |
tctgccaccggaagtgagtaatt |
539 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
25275763 |
tcggccaccggaagtgagtaatt |
25275741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 165 - 539
Target Start/End: Complemental strand, 5570497 - 5570125
Alignment:
| Q |
165 |
gcaaaaatccccttggtattgattcctcgctcgctttttagaagtca-tggttaactctgaaattacggcaacagttgcagcttaacattctgatgcgcc |
263 |
Q |
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|||||||||||||||| | || |||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |
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| T |
5570497 |
gcaaaaatccccttggcaatggttcctcattcgcttttgagaagtcaatggttaactctgaaattacggcaacagtcgcaacttcacattctgatgcgcc |
5570398 |
T |
|
| Q |
264 |
gactcatgatgttactgccaatacttttagctttgcattgcaaaatgtttcagacgcaattcaacagggtttgtttcctcaacctgcctctcccgtgttg |
363 |
Q |
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||||||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5570397 |
tactcatgatgttattgccaatacttttagctttgca-----aaatatttcggacgcaattcaacagggtttgttgcctcaacctgcctctcccgtgttg |
5570303 |
T |
|
| Q |
364 |
gaattagctactgtagtggctcataatgacgtgcattcacttggagtcgagcaaacacatccagatgatcagaacatgagcgttcccacttctccagctg |
463 |
Q |
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|||||| |||||||||| || || ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||||| |
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| T |
5570302 |
gaattatctactgtagttgcgcacgatgacgtgcattcacttagagtcgagcaaacacatccggatgatcaagacatgagtgttcctacttctccagctg |
5570203 |
T |
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| Q |
464 |
ctac---tccggttccatctattatagagcatgttgacgtgcatgaggatattttttctgccaccggaagtgagtaatt |
539 |
Q |
| |
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|| | |||||||||||||||| ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||| |
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| T |
5570202 |
ctgctgatccggttccatctattgtagagcacgttgacgtgcatgaggatattgtttccgcca-cggaagtgagtaatt |
5570125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 32136282 - 32136215
Alignment:
| Q |
95 |
gtggaaagggaaggttttgcttttcctgtcgaggttgattatgagtggctcccggatttctgttcaca |
162 |
Q |
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|||||||||||||| | |||||| |||||||| | ||||||||||||||||||||| |||||||| |
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| T |
32136282 |
gtggaaagggaaggatacgcttttaacgtcgaggtagcttatgagtggctcccggatttttgttcaca |
32136215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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