View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16141_high_6 (Length: 505)

Name: NF16141_high_6
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16141_high_6
NF16141_high_6
[»] chr6 (4 HSPs)
chr6 (18-495)||(29007335-29007813)
chr6 (115-481)||(21409421-21409776)
chr6 (115-249)||(21465429-21465563)
chr6 (265-481)||(21461710-21461926)


Alignment Details
Target: chr6 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 29007335 - 29007813
Alignment:
Q  18 atctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactaggaggagaatcactgtgtggtggactaggaggagaatcaccattcggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29007335 atctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactaggaggagaatcactgtgtggtggactaggaggagaatcaccattcggt 29007434  T
Q  118 ggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggcctt 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29007435 ggactaggaggagaatgagggcgtggtgcagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggcctt 29007534  T
Q  218 gttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29007535 gttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgc 29007634  T
Q  318 tattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29007635 tattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttc 29007734  T
Q  418 gttattacaaattttaa-ttcaagtctcgaaaaatacactttacattgttcccacctcttattttgagttttttctctg 495  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29007735 gttattacaaattttaatttcaagtctcgaaaaatacactttacattgttcccacctcttattttgagttttttctctg 29007813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 115 - 481
Target Start/End: Complemental strand, 21409776 - 21409421
Alignment:
Q  115 ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc 214  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||           ||||||||||||||||||||||||||||||  ||||| ||||    
T  21409776 ggtggactaggaggagaatgagggcatggtggagaaataggtggagg-----------tgttgttggactgagcttgaactttgactttgagtttcaggc 21409688  T
Q  215 cttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatt 314  Q
    ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| | ||||| ||| |||||||||||    
T  21409687 cttgttggcaatggcccattctgccacaaacgaagtagcgttttcctgattcaatgacgtggatcactgtttctcctgagttgtatgtcgaaatggcatt 21409588  T
Q  315 tgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccg 414  Q
    ||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||| |     
T  21409587 tgctattgtacatgtgttgtacccttgttggtttacctcaattacgtcgtacaacggtgtgtaagtaaacactgtcaatcatcacatatccaatgaa-ca 21409489  T
Q  415 ttcgttattacaaattttaattca-agtctcgaaaaatacactttacattgttcccacctcttatttt 481  Q
    || |||||||| |||||||||| | |   |||||||||||||||||| |||||||  || ||||||||    
T  21409488 tttgttattaccaattttaatttagacattcgaaaaatacactttactttgttcctgccacttatttt 21409421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 21465563 - 21465429
Alignment:
Q  115 ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc 214  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  21465563 ggtggactaggaggagaatgagggcatggtggagaaataggtggaggagaagttccagtgttgttggactgagcttgaactttgactttgagtttcaggc 21465464  T
Q  215 cttgttgacaatgacccattctgccacaaacgaag 249  Q
    ||||||| ||||| |||||||||||||||||||||    
T  21465463 cttgttggcaatggcccattctgccacaaacgaag 21465429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 265 - 481
Target Start/End: Complemental strand, 21461926 - 21461710
Alignment:
Q  265 tcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgt 364  Q
    |||||||||||||||||| ||||||||| ||||| ||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||| || |||| ||    
T  21461926 tcagtgaggtggatcactatttctccagagttgtatgtcgaaacggcgtttgctattgtacatgtgttgtacccttgttggtttacctcaattacgttgt 21461827  T
Q  365 ataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaattca-agtctcgaaaaatacactttacatt 463  Q
    | |||||||||||||||||| ||| |||||||||||||||||||||| | || |||||||| |||||||||| | |   || ||||||||||||||| ||    
T  21461826 acaacggtgtgtaagtaaacgctgtcaatcatcacatatccaatgaa-catttgttattactaattttaatttatacattcaaaaaatacactttacttt 21461728  T
Q  464 gttcccacctcttatttt 481  Q
    |||||  || ||||||||    
T  21461727 gttcctgccacttatttt 21461710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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