View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16141_low_1 (Length: 951)
Name: NF16141_low_1
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Complemental strand, 35845 - 35380
Alignment:
| Q |
13 |
gagatgaacatacgagtttgaaaacaatgtgacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35845 |
gagatgaacatacgagtttgaaaacaatgtcacaaattgtcatttttcaaaagaatagacatgaaaggagacaaaaagggacaagtgatttcaatcaagt |
35746 |
T |
|
| Q |
113 |
gataaaaggttataattaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35745 |
gataaaaggttataattaacaactttatatcctaggtgtatatcatatgggttgttatccaagtatgaaggtccttacaaaatacatataaaaactgaat |
35646 |
T |
|
| Q |
213 |
gaaagtagttgatgaataaagaaagaacgaaagaataatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35645 |
gaaagtagttgatgaataaagaaagaacgaaagaaaaatacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaat |
35546 |
T |
|
| Q |
313 |
tggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaac |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35545 |
tggcgaccatagagaaccaaagaagctcccacatagggacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaac |
35446 |
T |
|
| Q |
413 |
agcaaaatggcagccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35445 |
agcaaaatggcagccagttaacgtgctggctgaaagaaaaaagaaaatattgttgagatggatggc |
35380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 494 - 902
Target Start/End: Complemental strand, 35356 - 34953
Alignment:
| Q |
494 |
acatcaacaatgaatgaatgtgtgagagaaggtggctgaccaaaagtgaaaacatagccattgttggacatgagttgtttgttggcgatgataattccaa |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35356 |
acatcaacaatgaatgaatgtgtgagagaaggtggctgaccaaaagtgaaaacatagccattgttggacatgagttgtttgttagcgatgataattccaa |
35257 |
T |
|
| Q |
594 |
cggagctgacaatgttcatcccccatgctccaacattagataaagatgcttttttctttactactacattctccattatatctctctatctataataata |
693 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35256 |
cggagctgacaatgttcatcccccatgctccaacattagataaagatgcttttttctttactactacattctccattatatctctctatctataataata |
35157 |
T |
|
| Q |
694 |
ataacaacatcaacattaatcaatttgaaggataaccgctcctcctcctcccccttggctagatggatctaagaaatagtcgacagcacgcatgcattgt |
793 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35156 |
ataacaacaacaacattaatcaatttgaaggataaccgctcctcctcctcccccttggctagatggatctaagaaatagtcgacagcacgcatgcattgt |
35057 |
T |
|
| Q |
794 |
ttctctgcaaatgcatccaatccaatcaaatctacctttaattgtttatgtgattgggatcaaaacaaagatttcttcttttctttttagacaagattat |
893 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35056 |
ttctctgcaaatgcatcc-----aatcaaatctacctttaattgtttatgtgattgggatcaaaacaaagatttcttcttttctttttagacaagattat |
34962 |
T |
|
| Q |
894 |
taattagaa |
902 |
Q |
| |
|
||||||||| |
|
|
| T |
34961 |
taattagaa |
34953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 536 - 626
Target Start/End: Original strand, 8677443 - 8677533
Alignment:
| Q |
536 |
aaagtgaaaacatagccattgttggacatgagttgtttgttggcgatgataattccaacggagctgacaatgttcatcccccatgctccaa |
626 |
Q |
| |
|
||||||||| ||||||||||||||||||| || ||||| || || ||||||||||||||||| || |||| |||||| ||||||||||||| |
|
|
| T |
8677443 |
aaagtgaaagcatagccattgttggacataagctgtttattagccatgataattccaacggaactcacaacgttcataccccatgctccaa |
8677533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 418
Target Start/End: Original strand, 8677160 - 8677325
Alignment:
| Q |
250 |
atacttggtagaatccaacagagtttagcattaggctaaaattcatggcagtgatagacaaattggcgaccatagagaaccaaagaagctcccacatagg |
349 |
Q |
| |
|
||||||||||||||||||| || || ||||| ||||| || ||||| | |||||||| | |||||| || ||||||||||| ||||||||||| ||| |
|
|
| T |
8677160 |
atacttggtagaatccaacggaattgagcatgaggctcaagttcatcccggtgatagatatattggcaacagcagagaaccaaataagctcccacaaagg |
8677259 |
T |
|
| Q |
350 |
gacatgctttgatgaagacgagtaaccggtagcattggagagtataccaacgagagcggtaacagcaaa |
418 |
Q |
| |
|
|||||||| |||| || |||||||||||||| |||| | ||| || ||||| ||||||||||| |
|
|
| T |
8677260 |
aacatgctt---agaagcagaataaccggtagcatttgagacgagaccgacaagagcagtaacagcaaa |
8677325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University