View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_low_13 (Length: 380)
Name: NF16141_low_13
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 45965680 - 45966026
Alignment:
| Q |
16 |
acaacacagtcaattaatcatttaatgtcattttgtaagtagtaagtgttaaactataatgtttgatttcattaccataagttttgtaa-gattaactta |
114 |
Q |
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| T |
45965680 |
acaacacagtcaattaatcatttaatgtcattttgcaactagta-gtgttaaactacaatgtatgattccattaccataagttttgtaaagattaactta |
45965778 |
T |
|
| Q |
115 |
agattgtatcacaatgcatggctaaacataattaatcacacaattttttgtgataaatgtaaaccaacctcaacttgatagtacaatttgccatcatcag |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45965779 |
agatcgtatcacaatgcatggctaaacataattaatcacacaattttttgtgataaatgtaaaccaacctcaacttgatagtacaatttgccatcatcag |
45965878 |
T |
|
| Q |
215 |
caattctctgagaagtggagagaatattagattcacgtttaacaccaagtctagtggacataaactcagtaagatactgatcaagaactttctttccagc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45965879 |
caattctctgagaagtggagagaatattagattcacgtttaacaccaagtctagtggacataaactcagtaagatactgatcaagaactttctttccagc |
45965978 |
T |
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| Q |
315 |
ttgttgaggcgaacccaagtcttgaacagtcttgaattttgaggaaga |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45965979 |
ttgttgaggcgaacccaagtcttgaacagtcttgaattttgaggaaga |
45966026 |
T |
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