View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16141_low_14 (Length: 371)

Name: NF16141_low_14
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16141_low_14
NF16141_low_14
[»] chr3 (21 HSPs)
chr3 (18-325)||(1727315-1727622)
chr3 (23-217)||(15669146-15669337)
chr3 (155-203)||(13147007-13147055)
chr3 (155-200)||(15841106-15841151)
chr3 (155-203)||(1061431-1061479)
chr3 (155-203)||(9383566-9383614)
chr3 (155-203)||(12240461-12240509)
chr3 (155-203)||(18004834-18004882)
chr3 (155-201)||(17015073-17015119)
chr3 (155-203)||(1786772-1786820)
chr3 (155-203)||(4431047-4431095)
chr3 (155-203)||(6493248-6493296)
chr3 (155-203)||(8998853-8998901)
chr3 (155-203)||(9984790-9984838)
chr3 (155-203)||(10629850-10629898)
chr3 (155-203)||(11208996-11209044)
chr3 (155-203)||(13264561-13264609)
chr3 (155-203)||(16398924-16398972)
chr3 (155-203)||(29464108-29464156)
chr3 (155-203)||(29936456-29936504)
chr3 (155-203)||(29985610-29985658)
[»] chr7 (7 HSPs)
chr7 (60-213)||(24832055-24832208)
chr7 (20-88)||(4447123-4447191)
chr7 (155-203)||(13177376-13177424)
chr7 (325-356)||(13877045-13877076)
chr7 (249-307)||(27289231-27289289)
chr7 (155-203)||(15880809-15880857)
chr7 (155-203)||(18438473-18438521)
[»] chr6 (13 HSPs)
chr6 (19-82)||(19220188-19220251)
chr6 (158-203)||(17611499-17611544)
chr6 (158-203)||(22383858-22383903)
chr6 (151-203)||(9115401-9115453)
chr6 (155-203)||(28254480-28254528)
chr6 (155-203)||(28333229-28333277)
chr6 (248-297)||(12349486-12349535)
chr6 (158-203)||(17780873-17780918)
chr6 (155-203)||(13921087-13921135)
chr6 (155-203)||(17055303-17055351)
chr6 (155-203)||(18827270-18827318)
chr6 (155-203)||(25724638-25724686)
chr6 (155-203)||(27501545-27501593)
[»] chr2 (7 HSPs)
chr2 (155-203)||(24804573-24804621)
chr2 (155-203)||(19302718-19302766)
chr2 (155-203)||(21164869-21164917)
chr2 (155-203)||(24417948-24417996)
chr2 (153-213)||(26444023-26444083)
chr2 (155-203)||(28724240-28724288)
chr2 (155-203)||(43090521-43090569)
[»] chr1 (5 HSPs)
chr1 (228-325)||(27518805-27518902)
chr1 (155-203)||(19162625-19162673)
chr1 (155-203)||(22652536-22652584)
chr1 (155-203)||(7692418-7692466)
chr1 (155-203)||(19185034-19185082)
[»] scaffold0382 (2 HSPs)
scaffold0382 (155-203)||(4227-4275)
scaffold0382 (155-203)||(12610-12658)
[»] scaffold0211 (1 HSPs)
scaffold0211 (155-203)||(2626-2674)
[»] scaffold0010 (1 HSPs)
scaffold0010 (155-203)||(112857-112905)
[»] chr8 (6 HSPs)
chr8 (155-203)||(3840826-3840874)
chr8 (155-203)||(23790529-23790577)
chr8 (151-220)||(18163341-18163410)
chr8 (155-196)||(21296061-21296102)
chr8 (158-203)||(23802576-23802621)
chr8 (155-203)||(30317662-30317710)
[»] chr5 (11 HSPs)
chr5 (155-203)||(13531066-13531114)
chr5 (155-203)||(23485971-23486019)
chr5 (155-203)||(25182196-25182244)
chr5 (155-203)||(1119090-1119138)
chr5 (155-203)||(19466997-19467045)
chr5 (155-203)||(20554840-20554888)
chr5 (155-203)||(21668877-21668925)
chr5 (155-203)||(23398937-23398985)
chr5 (155-203)||(24944366-24944414)
chr5 (155-203)||(31421690-31421738)
chr5 (155-203)||(34054985-34055033)
[»] scaffold0892 (1 HSPs)
scaffold0892 (155-202)||(1343-1390)
[»] chr4 (8 HSPs)
chr4 (325-356)||(15867203-15867234)
chr4 (248-295)||(39042706-39042753)
chr4 (155-203)||(4990701-4990749)
chr4 (155-203)||(5020037-5020085)
chr4 (155-203)||(10298572-10298620)
chr4 (155-203)||(14838963-14839011)
chr4 (155-203)||(15199709-15199757)
chr4 (155-203)||(18755396-18755444)
[»] scaffold0388 (1 HSPs)
scaffold0388 (155-203)||(764-812)
[»] scaffold0047 (1 HSPs)
scaffold0047 (155-203)||(35797-35845)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 1727315 - 1727622
Alignment:
Q  18 ccagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtcttgaatgattctaagccgcata 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1727315 ccagagtccaaggttctgaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtcttgaatgattctaagccacata 1727414  T
Q  118 tcttgaagcctaaggttctgaagaaggaaaagtccttcagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaaattttctatgctac 217  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1727415 tcttgaagcctaaagttctgaagaaggaaaagtccttcagagctaaccccaaagaacccatgaaaatatgtgtacctaagtctgaaattttatatgctac 1727514  T
Q  218 agaaacactttatgggagaaccaacgcttcagtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttccaaacattaac 317  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1727515 agaaacactttatgggagaaccaacgcttcagtcatggtacctggacagtggttactcatgacacatgacaagagaaaagcacattttccaaacattaac 1727614  T
Q  318 actgaaag 325  Q
    ||||||||    
T  1727615 actgaaag 1727622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 23 - 217
Target Start/End: Original strand, 15669146 - 15669337
Alignment:
Q  23 gtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaaccaaaagtcttgaatgattctaagccgcatatcttg 122  Q
    |||||| ||||| |||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||  ||| ||||    
T  15669146 gtccaaagttctgaatagtccaaaacctaaagctaataagaattcaaggcctaaaacttttaaaccaaaagtcttcaatgattctaatccatatagcttg 15669245  T
Q  123 aagcctaaggttctgaagaaggaaaagtccttcagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaaattttctatgctac 217  Q
    ||||||||||||||   ||||||||| | ||| ||||| ||| |||||| ||||||||||||||| |||| ||||||| ||||||||||||||||    
T  15669246 aagcctaaggttct---gaaggaaaaatactttagaacaaacaccaaaggacccatgaaaatatgggtacataagtctaaaattttctatgctac 15669337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 13147055 - 13147007
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  13147055 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 13147007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 15841151 - 15841106
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtct 200  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||||||    
T  15841151 cagaactaaccccaaaggacccatgaagatatgggtacctaagtct 15841106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 1061479 - 1061431
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  1061479 cagaactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 1061431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 9383566 - 9383614
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||||||||| |||||||| ||||||    
T  9383566 cagaactaacccaaaaggacccatgaaaatatgggtacctaaatctgaa 9383614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 12240461 - 12240509
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||||||||||||| ||||| |||||||| ||||||    
T  12240461 cagaactaacccaaaagaacccatgaagatatgggtacctaaatctgaa 12240509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 18004882 - 18004834
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  18004882 cagaactaaccccaaaggacccatgaagatatgggtacctaaatctgaa 18004834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 17015119 - 17015073
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctg 201  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||    
T  17015119 cagaactaaccctaaaggacccatgaagatatgggtacctaagtctg 17015073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 1786772 - 1786820
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  1786772 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 1786820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 4431095 - 4431047
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||||| ||||| ||||||||| ||||| |||||||| ||||||    
T  4431095 cagaactaacctcaaaggacccatgaagatatgggtacctaaatctgaa 4431047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 6493248 - 6493296
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  6493248 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 6493296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 8998853 - 8998901
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  8998853 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 8998901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 9984790 - 9984838
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  9984790 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 9984838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 10629850 - 10629898
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  10629850 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 10629898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 11208996 - 11209044
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  11208996 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 11209044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 13264561 - 13264609
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  13264561 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 13264609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 16398924 - 16398972
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  16398924 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 16398972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 29464108 - 29464156
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  29464108 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 29464156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 29936456 - 29936504
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  29936456 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 29936504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 29985610 - 29985658
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  29985610 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 29985658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 24832208 - 24832055
Alignment:
Q  60 aagaattcaagacctaaaacctttaaaccaaaagtcttgaatgattctaagccgcatatcttgaagcctaaggttctgaagaaggaaaagtccttcagaa 159  Q
    ||||| ||||||||  | || |||||| | || ||| |||||||||  ||||  |||| |||||||||||| | | |||| |||||||| ||||| ||||    
T  24832208 aagaaatcaagaccagacacttttaaatctaaggtcctgaatgattaaaagcatcatagcttgaagcctaaaggtatgaaaaaggaaaattcctttagaa 24832109  T
Q  160 ctaaccccaaagaacccatgaaaatatgtgtacctaagtctgaaattttctatg 213  Q
    |||||||||||| ||||||||||||||| ||||| | |||||||||||||||||    
T  24832108 ctaaccccaaagtacccatgaaaatatgggtacccacgtctgaaattttctatg 24832055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 4447191 - 4447123
Alignment:
Q  20 agagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctttaaacc 88  Q
    |||| ||||||||||||| ||||||||||||||| |||||||||||||||||  | |||||||||||||    
T  4447191 agagcccaaggttctaaagagttcaaaacctaaatctaagaagaattcaagatatgaaacctttaaacc 4447123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 13177376 - 13177424
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  13177376 cagaactaaccctaaaggacccatgaagatatgggtacctaagtctgaa 13177424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 325 - 356
Target Start/End: Complemental strand, 13877076 - 13877045
Alignment:
Q  325 ggcaagattattggtacatgaactattggtaa 356  Q
    ||||||||||||||||||||||||||||||||    
T  13877076 ggcaagattattggtacatgaactattggtaa 13877045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 27289231 - 27289289
Alignment:
Q  249 gtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttcc 307  Q
    ||||||||||||| ||||||||| ||| || ||||||||| ||||||||| ||| ||||    
T  27289231 gtcatggtacttggacagtggttgctcgtgtcacatgacaggagaaaagcctatgttcc 27289289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 15880809 - 15880857
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  15880809 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 15880857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 18438521 - 18438473
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||  ||||||||| ||||| |||||||||||||||    
T  18438521 cagaactaacccaaaacgacccatgaagatatgggtacctaagtctgaa 18438473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 19220188 - 19220251
Alignment:
Q  19 cagagtccaaggttctaaatagttcaaaacctaaagctaagaagaattcaagacctaaaacctt 82  Q
    |||||||||||||||| || ||||||||||||||||||| ||||||||||||| | ||||||||    
T  19220188 cagagtccaaggttctgaagagttcaaaacctaaagctatgaagaattcaagatcaaaaacctt 19220251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 17611499 - 17611544
Alignment:
Q  158 aactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  17611499 aactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 17611544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 22383903 - 22383858
Alignment:
Q  158 aactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||||    
T  22383903 aactaacctcaaaggacccatgaaaatatgggtacctaagtctgaa 22383858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 9115401 - 9115453
Alignment:
Q  151 ccttcagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  9115401 ccttcagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 9115453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 28254480 - 28254528
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||||||||| |||||||| ||||||    
T  28254480 cagaactaacccaaaaggacccatgaaaatatgggtacctaaatctgaa 28254528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 28333229 - 28333277
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||||||||| |||||||| ||||||    
T  28333229 cagaactaacccaaaaggacccatgaaaatatgggtacctaaatctgaa 28333277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 12349535 - 12349486
Alignment:
Q  248 agtcatggtacttgaacagtggttactcatgacacatgacaagagaaaag 297  Q
    ||||||||||| || ||||||||| |||| ||||||||||| ||||||||    
T  12349535 agtcatggtacctgtacagtggttgctcacgacacatgacaggagaaaag 12349486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 17780918 - 17780873
Alignment:
Q  158 aactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  17780918 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 17780873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 13921135 - 13921087
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  13921135 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 13921087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 17055351 - 17055303
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||| ||||||| |||| ||||||||| ||||| |||||||||||||||    
T  17055351 cagagctaacccaaaaggacccatgaagatatgggtacctaagtctgaa 17055303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 18827270 - 18827318
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| |||||  ||||||||||||||    
T  18827270 cagaactaacccaaaaggacccatgaagatatggatacctaagtctgaa 18827318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 25724638 - 25724686
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  25724638 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 25724686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 27501593 - 27501545
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  27501593 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 27501545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 24804573 - 24804621
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  24804573 cagaactaaccccaaagaacccatgaagatatgggtacctaagtctgaa 24804621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 19302718 - 19302766
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| || |||||| ||||| |||||||||||||||    
T  19302718 cagaactaacccaaaaggactcatgaagatatgggtacctaagtctgaa 19302766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 21164869 - 21164917
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  21164869 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 21164917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 24417948 - 24417996
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  24417948 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 24417996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 26444083 - 26444023
Alignment:
Q  153 ttcagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaaattttctatg 213  Q
    |||||||||||| | |||| |||||| |||||||| |||||||||  ||||||| ||||||    
T  26444083 ttcagaactaactctaaaggacccataaaaatatgagtacctaagaatgaaattatctatg 26444023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 28724240 - 28724288
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  28724240 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 28724288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 43090569 - 43090521
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  43090569 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 43090521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 27518805 - 27518902
Alignment:
Q  228 tatgggagaaccaacgcttcagtcatggtacttgaacagtggttactcatgacacatgacaagagaaaagcatattttccaaacattaacactgaaag 325  Q
    |||||||||| ||| | | |||||||||||| |||||||| ||| |||  || ||||||||| |||||||||||| ||||||||  ||||| ||||||    
T  27518805 tatgggagaatcaaagttccagtcatggtacctgaacagtagttgctcccgatacatgacaatagaaaagcatatgttccaaaccctaacattgaaag 27518902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 19162625 - 19162673
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  19162625 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 19162673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 22652584 - 22652536
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  22652584 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 22652536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 7692418 - 7692466
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  7692418 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 7692466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 19185082 - 19185034
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  19185082 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 19185034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0382
Description:

Target: scaffold0382; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 4227 - 4275
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  4227 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 4275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0382; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 12610 - 12658
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  12610 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 12658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 2626 - 2674
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||    
T  2626 cagaactaaccccaaaggacccatgaagatatgggtacctaagtctgaa 2674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 112905 - 112857
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  112905 cagaactaacccaaaagtacccatgaagatatgggtacctaagtctgaa 112857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 3840874 - 3840826
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  3840874 cagaactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 3840826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 23790577 - 23790529
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  23790577 cagaactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 23790529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 18163410 - 18163341
Alignment:
Q  151 ccttcagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaaattttctatgctacaga 220  Q
    |||||||||  ||||| |||| |||||| || ||||| ||||| |||||||||||| |||||||| ||||    
T  18163410 ccttcagaatcaacccaaaaggacccataaagatatgagtaccgaagtctgaaattgtctatgctgcaga 18163341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 21296102 - 21296061
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaa 196  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||    
T  21296102 cagaactaaccccaaaggacccatgaagatatgggtacctaa 21296061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 23802621 - 23802576
Alignment:
Q  158 aactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  23802621 aactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 23802576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 30317662 - 30317710
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  30317662 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 30317710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 13531114 - 13531066
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  13531114 cagaactaacccaaaaggacccatgaagatatgggtacctaagtctgaa 13531066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 23486019 - 23485971
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||||||||||| || |||||| ||||| |||||||||||||||    
T  23486019 cagaactaaccccaaaggacacatgaagatatgggtacctaagtctgaa 23485971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 25182196 - 25182244
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||| ||||    
T  25182196 cagaactaaccccaaaggacccatgaagatatgcgtacctaagtttgaa 25182244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 1119138 - 1119090
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  1119138 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 1119090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 19466997 - 19467045
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  19466997 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 19467045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 20554840 - 20554888
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  20554840 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 20554888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 21668877 - 21668925
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| |||||  ||||||||||||||    
T  21668877 cagaactaacccaaaaggacccatgaagatatggttacctaagtctgaa 21668925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 23398937 - 23398985
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  23398937 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 23398985  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 24944414 - 24944366
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  24944414 cagaactaacccaaaaggacccatgaagatatgagtacctaaatctgaa 24944366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 31421690 - 31421738
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  31421690 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 31421738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 34054985 - 34055033
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  34054985 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 34055033  T

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Target: scaffold0892 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0892
Description:

Target: scaffold0892; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 1343 - 1390
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctga 202  Q
    |||||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  1343 cagaactaacccaaaaggacccatgaagatatgggtacctaagtctga 1390  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 325 - 356
Target Start/End: Original strand, 15867203 - 15867234
Alignment:
Q  325 ggcaagattattggtacatgaactattggtaa 356  Q
    ||||||||||||||||||||||||||||||||    
T  15867203 ggcaagattattggtacatgaactattggtaa 15867234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 39042753 - 39042706
Alignment:
Q  248 agtcatggtacttgaacagtggttactcatgacacatgacaagagaaa 295  Q
    ||||||||||| || ||||||||| |||| ||||||||||||||||||    
T  39042753 agtcatggtacctggacagtggttgctcacgacacatgacaagagaaa 39042706  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 4990701 - 4990749
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  4990701 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 4990749  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 5020085 - 5020037
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  5020085 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 5020037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 10298620 - 10298572
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  10298620 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 10298572  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 14838963 - 14839011
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  14838963 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 14839011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 15199709 - 15199757
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  15199709 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 15199757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 18755396 - 18755444
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  18755396 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 18755444  T

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Target: scaffold0388 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 812 - 764
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  812 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 35797 - 35845
Alignment:
Q  155 cagaactaaccccaaagaacccatgaaaatatgtgtacctaagtctgaa 203  Q
    |||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  35797 cagaactaacccaaaaggacccatgaagatatgggtacctaaatctgaa 35845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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