View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_low_15 (Length: 361)
Name: NF16141_low_15
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 1464210 - 1463880
Alignment:
| Q |
14 |
atcatcaagcggagtatggacaaggtagatatgtacgcggccttatccctgcaaacagataggttatttccaatatttgaacataagtcgacaaccttac |
113 |
Q |
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| T |
1464210 |
atcagcaagcggagtatggacaaggtagatatgtacgcggccttatccctgcaaacagataggttatttccaatatttgaacataagtcgacaaccttac |
1464111 |
T |
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| Q |
114 |
agttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagtgaaaaggaaaataacctaccttgttttccaagatattgttccatgcctttc |
213 |
Q |
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| T |
1464110 |
agttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagtgaaaaagaaaataacctaccttgttttccaagatattgttccatgcctttc |
1464011 |
T |
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| Q |
214 |
cactcagaatataacggattgcgattttcagtaaatcaagagggatgtaggtcaccagactgtacaaccagattacgccggcccaaccccatcccattcc |
313 |
Q |
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| T |
1464010 |
cactcagaatataacggattgcgattttcagtaaatcaagagggatgtaggtcaccagactgtacaaccagattacgccggcccaaccccatcccattcc |
1463911 |
T |
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| Q |
314 |
cttaattcttgcaaattcccaatctgcatac |
344 |
Q |
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| T |
1463910 |
cttaattcttgcaaattcccaatctgcatac |
1463880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 336
Target Start/End: Original strand, 1495714 - 1495871
Alignment:
| Q |
179 |
taccttgttttccaagatattgttccatgcctttccactcagaatataacggattgcgattttcagtaaatcaagagggatgtaggtcaccagactgtac |
278 |
Q |
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| T |
1495714 |
taccttattttccaaaagattatcccaagccttcccgcttagaaaatagcggattgcgaatttgagtaaatcaagagggatataagttaccaagctatac |
1495813 |
T |
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| Q |
279 |
aaccagattacgccggcccaaccccatcccattcccttaattcttgcaaattcccaat |
336 |
Q |
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| T |
1495814 |
aaccaaatcacaccagcccaaccccatcccattccctttattcttgcaaatccccaat |
1495871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 343
Target Start/End: Complemental strand, 1491617 - 1491523
Alignment:
| Q |
249 |
tcaagagggatgtaggtcaccagactgtacaaccagattacgccggcccaaccccatcccattcccttaattcttgcaaattcccaatctgcata |
343 |
Q |
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| T |
1491617 |
tcaagagggatataggttatcaaactatacaaccaaattacgtcgacctaaccccgtcccattgcctttattcttgcaaattcccaatttgcata |
1491523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 1490927 - 1491009
Alignment:
| Q |
252 |
agagggatgtaggtcaccagactgtacaaccagattacgccggcccaaccccatcccattcccttaattcttgcaaattccca |
334 |
Q |
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| T |
1490927 |
agagggaaataggttaccaaactgtacaaccagattatctcggcctaactccatatcattctctttattcttgcaaattccca |
1491009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 53 - 336
Target Start/End: Complemental strand, 26791884 - 26791604
Alignment:
| Q |
53 |
gccttatccctgcaaacagataggttatttccaatatttgaacataagtcgacaaccttacagttgcacaaaggcttgtccttatcaacaatgtgacgaa |
152 |
Q |
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||||||||||| ||| |||||| |||||||||||||||||||| || ||||||||| |||||| | |||||| |||||||||||| ||||| || |
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| T |
26791884 |
gccttatccctacaagcagatatactatttccaatatttgaacat--gtgaacaaccttagagttgcgccaaggctcgtccttatcaac---gtgaccaa |
26791790 |
T |
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| Q |
153 |
atgataaagtgaaaaggaa--aataacctaccttgttttccaagatattgttccatgcctttccactcagaatataacggattgcgattttcagtaaatc |
250 |
Q |
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| T |
26791789 |
atgataaagcgaaaataaataaaaaatctaccttgttttccaaaatattgttccatgcctttccactctgaatatagcggattgcaattttgagtatatc |
26791690 |
T |
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| Q |
251 |
aagagggatgtaggtcaccagactgtacaaccagattacgccggcccaaccccatcccattcccttaattcttgcaaattcccaat |
336 |
Q |
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||||||||| ||||| |||| |||||||||||| ||||| || |||||||||||||||||||| | ||||||||||||||||||| |
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| T |
26791689 |
aagagggatataggttaccaaactgtacaaccaaattacaccagcccaaccccatcccattccttgtattcttgcaaattcccaat |
26791604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 328
Target Start/End: Complemental strand, 50277606 - 50277491
Alignment:
| Q |
213 |
ccactcagaatataacggattgcgattttcagtaaatcaagagggatgtaggtcaccagactgtacaaccagattacgccggcccaaccccatcccattc |
312 |
Q |
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| T |
50277606 |
ccacttagaacatagcggattacgaatttgagtatatcaagggggatatatgtcactatactgtacatccagattacaccagcccaaccccatcccattc |
50277507 |
T |
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| Q |
313 |
ccttaattcttgcaaa |
328 |
Q |
| |
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|||||||||||||||| |
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| T |
50277506 |
ccttaattcttgcaaa |
50277491 |
T |
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