View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_low_19 (Length: 302)
Name: NF16141_low_19
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 192 - 292
Target Start/End: Original strand, 42822763 - 42822863
Alignment:
| Q |
192 |
ttctgtaaaaactgtttcagtccttgtgagatgaaaattaaggtcttcaaattggcctcttcataacaaatttctacaaattaaaattggatctatttct |
291 |
Q |
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| T |
42822763 |
ttctgtaaaaactgtttcagtccttgttagattaaaattaaggtcttcaaattggcctcttcataacaaatttctacaaattaaaattggatctatttct |
42822862 |
T |
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| Q |
292 |
t |
292 |
Q |
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| T |
42822863 |
t |
42822863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 42822494 - 42822622
Alignment:
| Q |
18 |
tattctatgttactaactaacctcatgcatgtgcggagccacactattaggcttaccaaggatctggattccacttgatctggacggtctgatctaaaat |
117 |
Q |
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| T |
42822494 |
tattctatgttactaactaacctcatgcatgttcggacccacactattaggcttaccaaggatctggattccact--------------tgatctaaaat |
42822579 |
T |
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| Q |
118 |
gaacggccaaaatcttaaattgtgtgaaatttctaaaatccat |
160 |
Q |
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| T |
42822580 |
gaacggtcaaaatcttaaattgtgtgaaatttctaaaatccat |
42822622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 42822688 - 42822723
Alignment:
| Q |
159 |
atcccggtccggctcacatgttcaaaagatgttttc |
194 |
Q |
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| T |
42822688 |
atcccggtccggctcacatgttcaaaagatgttttc |
42822723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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