View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_low_20 (Length: 291)
Name: NF16141_low_20
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 34139330 - 34139476
Alignment:
| Q |
139 |
ttaccccatttataaggcttatattttgaagggttttgctcgttaataagctcctccaaaggcttgatttcaatatcatatcctgggttgaaaaagaatg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34139330 |
ttaccccatttataaggcttatattttgaagggttttgctcgttaataagctcctccaaaggcttgatttcaatatcatatcctgggttgaaaaagaatg |
34139429 |
T |
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| Q |
239 |
gaatagaaaatctttctttctccttgttcaccaatgctctgtgctcc |
285 |
Q |
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| T |
34139430 |
gaatagaaaatctttctttctccttgttcaccaatgctctgtgctcc |
34139476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 34139183 - 34139306
Alignment:
| Q |
21 |
aacaccgatcaatctttggttgtttacatgagctaagtaatacatttattaaaatatctttctctaaggtagct--tataatgataaatttgaagattct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34139183 |
aacaccgatcaatctttggttgtttacatgagctaagtcatacatttattaaaatatctttctctaaggtagcttatataatgataaatttgaagattct |
34139282 |
T |
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| Q |
119 |
cctcttcttgtttcttgaggttac |
142 |
Q |
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| T |
34139283 |
cctcttcttgtttcttgaagttac |
34139306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 34136233 - 34136348
Alignment:
| Q |
21 |
aacaccgatcaatctttggttgtttacatgagctaagtaatacatttattaaaatatctttctctaaggtagcttataatgataaatttgaagattctcc |
120 |
Q |
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| T |
34136233 |
aacactgatcaatctttggttgtgtaaatgagctaagtgatacatttattaaactatctttctctactgtagcttataatgataaatttgaagattctcc |
34136332 |
T |
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| Q |
121 |
tcttcttgtttcttga |
136 |
Q |
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|| ||||||||||||| |
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| T |
34136333 |
tcatcttgtttcttga |
34136348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 34136378 - 34136524
Alignment:
| Q |
139 |
ttaccccatttataaggcttatattttgaagggttttgctcgttaataagctcctccaaaggcttgatttcaatatcatatcctgggttgaaaaagaatg |
238 |
Q |
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|||||||||||||| ||||||||||||| || |||||||| || |||||||||||||||||||||||||| ||||| |||||| ||||| ||||||| |
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| T |
34136378 |
ttaccccatttatatggcttatattttggagagttttgcttatttgtaagctcctccaaaggcttgatttcagcatcatgtcctggattgaagaagaatg |
34136477 |
T |
|
| Q |
239 |
gaatagaaaatctttctttctccttgttcaccaatgctctgtgctcc |
285 |
Q |
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|||||||||| || ||||||||||||||||||| | |||| |||||| |
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| T |
34136478 |
gaatagaaaacctctctttctccttgttcaccattactctatgctcc |
34136524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 285
Target Start/End: Original strand, 34142013 - 34142156
Alignment:
| Q |
142 |
ccccatttataaggcttatattttgaagggttttgctcgttaataagctcctccaaaggcttgatttcaatatcatatcctgggttgaaaaagaatggaa |
241 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||||| || |||||||| || ||||| |||| |||| |||||||||||| |||||||| |||| |
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| T |
34142013 |
ccccatttatatggcctatattttgaagggttttgctcatttataagctcttcaaaaggtttgacttcagcgtcatatcctgggaataaaaagaagggaa |
34142112 |
T |
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| Q |
242 |
tagaaaatctttctttctccttgttcaccaatgctctgtgctcc |
285 |
Q |
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||||||| ||||| ||||| || |||| | |||||||||||| |
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| T |
34142113 |
tagaaaacctttccttctctgtgctcacaatcgctctgtgctcc |
34142156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 34141926 - 34141980
Alignment:
| Q |
82 |
ctctaaggtagcttataatgataaatttgaagattctcctcttcttgtttcttga |
136 |
Q |
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||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
34141926 |
ctctagggtagcttataatgataaatttgaagattctccacatcttgtttcttga |
34141980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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