View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_low_22 (Length: 287)
Name: NF16141_low_22
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 55169115 - 55169319
Alignment:
| Q |
21 |
taaaaatactcaagaacgatagtgtagcttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttgggtgaaatttccacgttt |
120 |
Q |
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| T |
55169115 |
taaaaatactcaagaacgatagtgtagcttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttgggtgaaatttccacgttt |
55169214 |
T |
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| Q |
121 |
gaggtcggggcggaggtagttgatccaccggagacggcaactcttaccgcaacggagaagaccagcggcttttcggagagagcgccagcatccctcaccg |
220 |
Q |
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| T |
55169215 |
gaggtcggggcgtaggtagttgatccaccggagacggcaactcttaccgcaacggagaagaccagcggcttttgggagagagcgccagcatccctcaccg |
55169314 |
T |
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| Q |
221 |
tgagc |
225 |
Q |
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||||| |
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| T |
55169315 |
tgagc |
55169319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 55169319 - 55169355
Alignment:
| Q |
241 |
cagccgctcatcttcttctttgctccatgctcctttg |
277 |
Q |
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| T |
55169319 |
cagccgctcatcttcttctttgctccatgctcctttg |
55169355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 277
Target Start/End: Complemental strand, 27808307 - 27808078
Alignment:
| Q |
48 |
cttacttgttaccgaggagagtgtggagttttatgatgagttgatcttcttgttgggtgaaatttccacgtttgaggtcggggcggaggtagttgatcca |
147 |
Q |
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| T |
27808307 |
cttacttgttaccaagaagactatggagtttgatgatgagttcatcttcttcttctgtaaagttaccacgtttaaggtctggcctgagatagttaatcca |
27808208 |
T |
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| Q |
148 |
ccggagacggcaactcttaccgcaacggagaagaccagcggcttttcggagagagcgccagcatccctcaccgtgagctctaatataagctatcagccgc |
247 |
Q |
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||||||||| ||||| ||||| || ||||| | ||||| ||||| ||||||| | ||| || || ||||| || || |||||||| | ||| || | |
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| T |
27808207 |
ccggagacgacaacttttaccacatcggagtaagccagctgctttagggagagatctccaacaaccttcaccatgtgccctaatatatgatataagtcta |
27808108 |
T |
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| Q |
248 |
tcatcttcttctttgctccatgctcctttg |
277 |
Q |
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|||||||||||||| |||| ||||||||| |
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| T |
27808107 |
tcatcttcttcttttgtccaagctcctttg |
27808078 |
T |
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