View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_low_23 (Length: 278)
Name: NF16141_low_23
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 39031867 - 39031610
Alignment:
| Q |
7 |
catgctaccaatgttgttacaaatggtttgattgatttttgtctataatttatggtatcattaactcattttttattttgttacaatcttaggactgtta |
106 |
Q |
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| T |
39031867 |
catgctaccaatgttgttacaaatggtttgattgatttttgtctataatttatggtatcattaactcattttttattttgttacaatcttaggactgtta |
39031768 |
T |
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| Q |
107 |
aattctatactggacacaagcaagattgaggcaggaaaaatgcaactagaggaagaggaatttgatttatccaatctccttgaggatgtagttgatttgt |
206 |
Q |
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| T |
39031767 |
aattctatactggacacaagcaagattgaggcaggaaaaatgcaactagaggaagaggaatttgatttatccaatctccttgaggatgtagttgatttgt |
39031668 |
T |
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| Q |
207 |
accatccaatggcaatgaagaaaggtgtagaagttgtattggactcttgtaatggctc |
264 |
Q |
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| T |
39031667 |
accatccaatggcaatgaagaaaggtgtagaagttgtattggactcttgtaatggctc |
39031610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 267
Target Start/End: Complemental strand, 40897478 - 40897304
Alignment:
| Q |
93 |
tcttaggactgttaaattctatactggacacaagcaagattgaggcaggaaaaatgcaactagaggaagaggaatttgatttatccaatctccttgagga |
192 |
Q |
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| T |
40897478 |
tcttaggactattgaactctatacttgacacaagcaaaattgaggtaggaaaaatggaacttgtggaagaagaatttgatttatctcatttcttggaaga |
40897379 |
T |
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| Q |
193 |
tgtagttgatttgtaccatccaatggcaatgaagaaaggtgtagaagttgtattggactcttgtaatggctctgt |
267 |
Q |
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| T |
40897378 |
agtggttgatatataccatcttgtggcgatggagaaaggtgtagatcttgtattggacccttgtaatggttctgt |
40897304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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