View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_low_24 (Length: 260)
Name: NF16141_low_24
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4720157 - 4719916
Alignment:
| Q |
1 |
aacatcagcaagcgtaaacacaaaatacttgactt-atagtagagagataataaacaccagagcttggacaaccaatgaatgtgaagaaatgtgacaatc |
99 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4720157 |
aacagcagcaagcgtaaacacaaaatacttgactttatagtagagagataataaacaccagagcatggacaaccaatgaatgtgaagaaatgtgacaatc |
4720058 |
T |
|
| Q |
100 |
agcatggagtataaaagaacgtgtcattgtctctttctccctttcttattttacgtcatcaacgttggttccatgaaatgcatatactctgattgaaatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4720057 |
agcatggagtataaaagaacgtgtcattgtctctttctccatttcttattttacatcatcaacgttggttccatgaaatgcatatactctgattgaaact |
4719958 |
T |
|
| Q |
200 |
tggtcacgacattgatgtttagaaattattgatgggtagaat |
241 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
4719957 |
tggtcacgaaattgatgtttagaaattattgatgggtggaat |
4719916 |
T |
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