View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_low_29 (Length: 239)
Name: NF16141_low_29
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_29 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 36538458 - 36538688
Alignment:
| Q |
9 |
gacatcatcatcgtccagtgttacgagtatttggcaagttacctttctttcctatgtttcctcgtgcaacttcccctacgttgttgtctttgcaaccaat |
108 |
Q |
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| T |
36538458 |
gacatcatcatcgtccagtgttacgagtatttggcaagttacctttctttcctatgtttcctcgtacaacttcccctacgttgttgtctttgcaaccaat |
36538557 |
T |
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| Q |
109 |
gaaccaacaacctcaatttccacaacccacaaatcaaaatgcaacctttcttcttccttctcctactattcacctcttccttcattcccacgcaatcaca |
208 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36538558 |
gaaccaacaacctcaatttccacaacctacaaatcaaaatgcaacctttcttcttccttctcctactattcacctcttccttcattcccacgcaatcaca |
36538657 |
T |
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| Q |
209 |
atctcaacctcaaccccaaaaccaagctttc |
239 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
36538658 |
atctcaacctcaaccccaaaaccaagctttc |
36538688 |
T |
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