View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_low_31 (Length: 213)
Name: NF16141_low_31
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 30630374 - 30630471
Alignment:
| Q |
104 |
tgtcaaatgcaatgttctttgatattttgtgtatgtttaagagatattgtatatatacgcagataaatcattatgcgacgcccttttttaatgatgat |
201 |
Q |
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| T |
30630374 |
tgtcaaatgcaatgttctttgatattttgtgtatgtttaagagatattgtatatatacgcagataaatcattatgcgacgcccttttttaatgatgat |
30630471 |
T |
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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30630261 - 30630319
Alignment:
| Q |
1 |
aatcaaagggttggccattactccaatgctacttactccattcaaccttgagaaatgat |
59 |
Q |
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| T |
30630261 |
aatcaaagggttggccattactccaatgctacttactccattcaaccttgagaaatgat |
30630319 |
T |
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