View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_low_4 (Length: 603)
Name: NF16141_low_4
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 48 - 592
Target Start/End: Complemental strand, 12607867 - 12607328
Alignment:
| Q |
48 |
tctgtataaaagatttgcatatgtttttgtagcaactctttaaattaatcacaataatgctatgattaacacaaaatttggatcattgcattgcattgca |
147 |
Q |
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| T |
12607867 |
tctgtataaaatatttgcatatgtttttgtagcaactctttaaattaatcacaataatgctatgattgacacaaaatttggatcattgcattgcat---- |
12607772 |
T |
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| Q |
148 |
tgtattccaaattgcgtgcaaatatcaaaatttccatcatgattgattggtaacattttaatagataattgctaataattttatagataatgttgatata |
247 |
Q |
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| T |
12607771 |
-gtgttccaaattgcgtgcaaatatcaaaatttccatcatgattgattggtaacattttaatagataattgctaataattttatagataatgttgatata |
12607673 |
T |
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| Q |
248 |
ataatcatacacttatacacgtgattagaaaattaaccagctcaaatgactaagacatatttggtcaaggattatgacataactttaacaaataaatcat |
347 |
Q |
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| T |
12607672 |
ataatcatacacttatacacgtgattagaaaattaaccagctcaaatgactaagacatatttggtcaaggactatgacataactttaacaaataaatcat |
12607573 |
T |
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| Q |
348 |
caaatatagtacaaactaaattacaataatttgcttagttgtcaattattatgaccttggcgtacgaaaagcgaattgaaccccccaccaagcaagaagc |
447 |
Q |
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| T |
12607572 |
caaatatagtacaaactaaattacaataatttgcttagttgtcaattattatgaccttggcgtacgaaaagcgaattgaaccccccaccaagccagaagc |
12607473 |
T |
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| Q |
448 |
agaagaaattagagttaagagggaacaagcaattgagaaactcaggcaaatggtgcctaccacgtgcaccaataaatggtgtttgcttgcttgttttcat |
547 |
Q |
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| T |
12607472 |
agaagaaattagagttaagagggaacaagcaattgagaaactcaggcaaatggtgcctaccacgtgcaccaataaatggtgtttgcttgcttgttttcat |
12607373 |
T |
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| Q |
548 |
aaagcactaatacaaattttaaggaactctactctttcatctcac |
592 |
Q |
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| T |
12607372 |
aaagcactaatacaaattttaaggaactctactttttcatctcac |
12607328 |
T |
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