View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16141_low_5 (Length: 583)
Name: NF16141_low_5
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 150 - 506
Target Start/End: Complemental strand, 34678170 - 34677814
Alignment:
| Q |
150 |
cgctgtgagcatttagctctctctactgtttcactctcagattataaacaaaagagtacatcacatgaatgttcatatacaagactcatcaaatcatcgt |
249 |
Q |
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| T |
34678170 |
cgctgtgagcatttagctctctctactgtttcactctcagattataaacaaaagagtacatcacatgaatgttcatatacaagagtcatcaaatcatcgt |
34678071 |
T |
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| Q |
250 |
agaaaataaggattatttcatgatgtgatcgatgattcaattgcacacaagttaaacagtttaacttgaagattcataagtcataacactacgtatagtt |
349 |
Q |
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| T |
34678070 |
agaaaataaggattatttcatgatgtgatcgatgattcaattgcacacaagttaaacagtttaacttgaagattcataagtcataacactacgtatagtt |
34677971 |
T |
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| Q |
350 |
ccatctagaataatcaaaataacggcttagctttttgttgttctgttttcatgaaaatgaaaggctaacttcactgttagtattttctcttctggaaaca |
449 |
Q |
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| T |
34677970 |
ccacctagaataatcaaaataacggcttagctttttgttgttctgttttcatgaaaatgaaaggctaacttcactgttagtattttctcttctggaaaca |
34677871 |
T |
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| Q |
450 |
tggagagcaaatgcagctgaacatgtagcttagaaaacactgctatagtttcttcta |
506 |
Q |
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| T |
34677870 |
tggagagcaaatgcagctgaacatgtagcttagaaaactctgctatagtttcttcta |
34677814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 34678295 - 34678237
Alignment:
| Q |
18 |
catggaacatactgtgatgatctggatttgttaattatgtgtgtaaacagtgtatgtgg |
76 |
Q |
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| T |
34678295 |
catggaacatactgtgatgatctggatttgttaattatgtgtgtaaacagtgtatgtgg |
34678237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 529 - 574
Target Start/End: Complemental strand, 34677780 - 34677735
Alignment:
| Q |
529 |
attctaatcatagataaaacaaccctaactctcctattagtattat |
574 |
Q |
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| T |
34677780 |
attctaatcatagataaaacaaccctaactctcctattagtattat |
34677735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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