View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16141_low_7 (Length: 505)

Name: NF16141_low_7
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16141_low_7
NF16141_low_7
[»] chr6 (4 HSPs)
chr6 (18-495)||(29007335-29007813)
chr6 (115-481)||(21409421-21409776)
chr6 (115-249)||(21465429-21465563)
chr6 (265-481)||(21461710-21461926)


Alignment Details
Target: chr6 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 29007335 - 29007813
Alignment:
Q  18 atctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactaggaggagaatcactgtgtggtggactaggaggagaatcaccattcggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29007335 atctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactaggaggagaatcactgtgtggtggactaggaggagaatcaccattcggt 29007434  T
Q  118 ggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggcctt 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29007435 ggactaggaggagaatgagggcgtggtgcagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggcctt 29007534  T
Q  218 gttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29007535 gttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgc 29007634  T
Q  318 tattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29007635 tattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttc 29007734  T
Q  418 gttattacaaattttaa-ttcaagtctcgaaaaatacactttacattgttcccacctcttattttgagttttttctctg 495  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29007735 gttattacaaattttaatttcaagtctcgaaaaatacactttacattgttcccacctcttattttgagttttttctctg 29007813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 115 - 481
Target Start/End: Complemental strand, 21409776 - 21409421
Alignment:
Q  115 ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc 214  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||           ||||||||||||||||||||||||||||||  ||||| ||||    
T  21409776 ggtggactaggaggagaatgagggcatggtggagaaataggtggagg-----------tgttgttggactgagcttgaactttgactttgagtttcaggc 21409688  T
Q  215 cttgttgacaatgacccattctgccacaaacgaagtagcgtgttcctgattcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatt 314  Q
    ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| | ||||| ||| |||||||||||    
T  21409687 cttgttggcaatggcccattctgccacaaacgaagtagcgttttcctgattcaatgacgtggatcactgtttctcctgagttgtatgtcgaaatggcatt 21409588  T
Q  315 tgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgtataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccg 414  Q
    ||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||| |     
T  21409587 tgctattgtacatgtgttgtacccttgttggtttacctcaattacgtcgtacaacggtgtgtaagtaaacactgtcaatcatcacatatccaatgaa-ca 21409489  T
Q  415 ttcgttattacaaattttaattca-agtctcgaaaaatacactttacattgttcccacctcttatttt 481  Q
    || |||||||| |||||||||| | |   |||||||||||||||||| |||||||  || ||||||||    
T  21409488 tttgttattaccaattttaatttagacattcgaaaaatacactttactttgttcctgccacttatttt 21409421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 21465563 - 21465429
Alignment:
Q  115 ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc 214  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||    
T  21465563 ggtggactaggaggagaatgagggcatggtggagaaataggtggaggagaagttccagtgttgttggactgagcttgaactttgactttgagtttcaggc 21465464  T
Q  215 cttgttgacaatgacccattctgccacaaacgaag 249  Q
    ||||||| ||||| |||||||||||||||||||||    
T  21465463 cttgttggcaatggcccattctgccacaaacgaag 21465429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 265 - 481
Target Start/End: Complemental strand, 21461926 - 21461710
Alignment:
Q  265 tcagtgaggtggatcactgtttctccagtgttgtgtgtggaaatggcatttgctattgtacatgtgttgtagccttgttggtttacctcgatcacgtcgt 364  Q
    |||||||||||||||||| ||||||||| ||||| ||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||| || |||| ||    
T  21461926 tcagtgaggtggatcactatttctccagagttgtatgtcgaaacggcgtttgctattgtacatgtgttgtacccttgttggtttacctcaattacgttgt 21461827  T
Q  365 ataacggtgtgtaagtaaacactgccaatcatcacatatccaatgaaccgttcgttattacaaattttaattca-agtctcgaaaaatacactttacatt 463  Q
    | |||||||||||||||||| ||| |||||||||||||||||||||| | || |||||||| |||||||||| | |   || ||||||||||||||| ||    
T  21461826 acaacggtgtgtaagtaaacgctgtcaatcatcacatatccaatgaa-catttgttattactaattttaatttatacattcaaaaaatacactttacttt 21461728  T
Q  464 gttcccacctcttatttt 481  Q
    |||||  || ||||||||    
T  21461727 gttcctgccacttatttt 21461710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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